View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_103 (Length: 253)

Name: NF14349_low_103
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_103
NF14349_low_103
[»] chr3 (3 HSPs)
chr3 (7-205)||(45297549-45297747)
chr3 (7-113)||(54829553-54829659)
chr3 (163-205)||(49160987-49161029)
[»] chr7 (6 HSPs)
chr7 (7-205)||(40320260-40320458)
chr7 (160-210)||(35771262-35771312)
chr7 (160-205)||(24995852-24995897)
chr7 (160-205)||(40319606-40319651)
chr7 (106-146)||(36662542-36662582)
chr7 (173-205)||(40257580-40257612)
[»] chr5 (5 HSPs)
chr5 (168-205)||(12201377-12201414)
chr5 (171-205)||(26711568-26711602)
chr5 (171-205)||(26981305-26981339)
chr5 (168-205)||(6803948-6803985)
chr5 (160-204)||(4789521-4789565)
[»] chr4 (7 HSPs)
chr4 (91-207)||(231983-232099)
chr4 (160-205)||(41261893-41261938)
chr4 (171-210)||(20351325-20351364)
chr4 (160-206)||(25970105-25970151)
chr4 (160-205)||(231436-231481)
chr4 (160-205)||(23383310-23383355)
chr4 (160-205)||(39429940-39429985)
[»] chr2 (1 HSPs)
chr2 (160-205)||(6085704-6085749)
[»] chr6 (1 HSPs)
chr6 (169-205)||(28975340-28975376)
[»] chr8 (1 HSPs)
chr8 (163-205)||(35943845-35943887)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 45297747 - 45297549
Alignment:
Q  7 gtgagatgaacgaaattagtgcatgaagaaagaagccactgggttgttttcattcaagattaaaaggttgaagaaagtggaaacaaaaaatctagtgatg 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  45297747 gtgagataaacgaaattagtgcatgaagaaagaagccactgggctgttttcattcaaggttaaaaggttgaagaaagtggaaacaaaaaatctagtgatg 45297648  T
Q  107 agagatcatgataagatcaatgttccttgttgatctaatggttgnnnnnnnnnttcccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||  | |||||||||||||||||||||||||||||||||||    
T  45297647 agagatcatgataagatcaatgttccttgttgatctaatggttaaaaaaaactttcccatgatgggaaacaactctcctttcccatactaaaccccacc 45297549  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 54829553 - 54829659
Alignment:
Q  7 gtgagatgaacgaaattagtgcatgaagaaagaagccactgggttgttttcattcaagattaaaaggttgaagaaagtggaaacaaaaaatctagtgatg 106  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||    
T  54829553 gtgagataaacaaaattagtgcatgaaaaaagaagccactgggctgttttcattcaaggttaaaaggttgaagaaagtggaaataaaaaatttagtgatg 54829652  T
Q  107 agagatc 113  Q
    |||||||    
T  54829653 agagatc 54829659  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 49161029 - 49160987
Alignment:
Q  163 ccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    |||| |||||||||||||| |||||||||| ||||||||||||    
T  49161029 ccatggtaggaaacaactcccctttcccatgctaaaccccacc 49160987  T

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Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 40320260 - 40320458
Alignment:
Q  7 gtgagatgaacgaaattagtgcatgaagaaagaagccactgggttgttttcattcaagattaaaaggttgaagaaagtggaaacaaaaaatctagtgatg 106  Q
    ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40320260 gtgagataaacgaaattaatgcatgaagaaagaagccactgggctgttttcattcaaggttaaaaggttgaagaaagtggaaacaaaaaatctagtgatg 40320359  T
Q  107 agagatcatgataagatcaatgttccttgttgatctaatggttgnnnnnnnnnttcccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||         || |||| || |||||||||||||||||||||| ||||||||||||    
T  40320360 agagatcatgataagatcaatgttccttgttgatctaatggttgaaaaaaacttttccatggtgggaaacaactctcctttcccatgctaaaccccacc 40320458  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 35771262 - 35771312
Alignment:
Q  160 ttcccatagtaggaaacaactctcctttcccatactaaaccccaccaataa 210  Q
    ||||||| || |||||||||| | |||||||||||||||||||||| ||||    
T  35771262 ttcccatggtgggaaacaactttgctttcccatactaaaccccaccgataa 35771312  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 24995897 - 24995852
Alignment:
Q  160 ttcccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||| || ||||||||||| |||||||||| ||||||||||||    
T  24995897 ttcccatggtgggaaacaactcccctttcccattctaaaccccacc 24995852  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 40319651 - 40319606
Alignment:
Q  160 ttcccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||| || ||||| |||||||| ||||||||||||||||||||    
T  40319651 ttcccatggtgggaaataactctccattcccatactaaaccccacc 40319606  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 36662542 - 36662582
Alignment:
Q  106 gagagatcatgataagatcaatgttccttgttgatctaatg 146  Q
    |||||| |||||||||||||||||||||  |||||||||||    
T  36662542 gagagaccatgataagatcaatgttcctgtttgatctaatg 36662582  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 40257612 - 40257580
Alignment:
Q  173 aaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||||||| |||||||||||||||||||||    
T  40257612 aaacaactctcatttcccatactaaaccccacc 40257580  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 12201414 - 12201377
Alignment:
Q  168 gtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12201414 gtaggaaacaactctcctttcccatactaaaccccacc 12201377  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 26711602 - 26711568
Alignment:
Q  171 ggaaacaactctcctttcccatactaaaccccacc 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  26711602 ggaaacaactttcctttcccatactaaaccccacc 26711568  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 26981339 - 26981305
Alignment:
Q  171 ggaaacaactctcctttcccatactaaaccccacc 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  26981339 ggaaacaactttcctttcccatactaaaccccacc 26981305  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 6803985 - 6803948
Alignment:
Q  168 gtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    |||||||||||||  |||||||||||||||||||||||    
T  6803985 gtaggaaacaacttccctttcccatactaaaccccacc 6803948  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 4789565 - 4789521
Alignment:
Q  160 ttcccatagtaggaaacaactctcctttcccatactaaaccccac 204  Q
    ||||||| || ||||||||||| |||||||||| |||||||||||    
T  4789565 ttcccatggtgggaaacaactcccctttcccatgctaaaccccac 4789521  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 231983 - 232099
Alignment:
Q  91 aaaaaatctagtgatgagagatcatgataagatcaatgttccttgttgatctaatggttgnnnnnnnnnttcccatagtaggaaacaactctcctttccc 190  Q
    ||||||| |||||  ||||||  ||||||||||||||||||||  || |||||||||||          ||||||| || ||||||||||  ||||||||    
T  231983 aaaaaatttagtgtggagagactatgataagatcaatgttcctcatttatctaatggttaaaatttactttcccatggtgggaaacaacttccctttccc 232082  T
Q  191 atactaaaccccaccaa 207  Q
    |||||||||||||||||    
T  232083 atactaaaccccaccaa 232099  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 41261893 - 41261938
Alignment:
Q  160 ttcccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||    
T  41261893 ttcccatggtaggaaacaactctcatttcccatactaaaccccacc 41261938  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 210
Target Start/End: Original strand, 20351325 - 20351364
Alignment:
Q  171 ggaaacaactctcctttcccatactaaaccccaccaataa 210  Q
    |||||||||||||| |||||||||||||||||||| ||||    
T  20351325 ggaaacaactctccattcccatactaaaccccacctataa 20351364  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 25970151 - 25970105
Alignment:
Q  160 ttcccatagtaggaaacaactctcctttcccatactaaaccccacca 206  Q
    ||||||| || ||||||||||| |||||||||| |||||||||||||    
T  25970151 ttcccatggtgggaaacaactcccctttcccatgctaaaccccacca 25970105  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 231481 - 231436
Alignment:
Q  160 ttcccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||| |||| ||||||||  |||||||||||||||||||||||    
T  231481 ttcccatggtagaaaacaacttccctttcccatactaaaccccacc 231436  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 23383355 - 23383310
Alignment:
Q  160 ttcccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||| || |||||||||||||||||| ||| ||||||||||||    
T  23383355 ttcccatggtgggaaacaactctcctttctcattctaaaccccacc 23383310  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 39429940 - 39429985
Alignment:
Q  160 ttcccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||| || |||||||||||||| ||||||| ||||||||||||    
T  39429940 ttcccatggtgggaaacaactctccattcccatgctaaaccccacc 39429985  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 6085704 - 6085749
Alignment:
Q  160 ttcccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||||    
T  6085704 ttcccatggtaggaaacaactcacctttcccatgctaaaccccacc 6085749  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 28975376 - 28975340
Alignment:
Q  169 taggaaacaactctcctttcccatactaaaccccacc 205  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28975376 taggaaacaactctcctttcccatgctaaaccccacc 28975340  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 35943845 - 35943887
Alignment:
Q  163 ccatagtaggaaacaactctcctttcccatactaaaccccacc 205  Q
    ||||||| |||||||| ||||||||||||| ||||||||||||    
T  35943845 ccatagtgggaaacaattctcctttcccatgctaaaccccacc 35943887  T

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