View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_104 (Length: 252)
Name: NF14349_low_104
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_104 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 7621498 - 7621276
Alignment:
| Q |
14 |
agagattcaattccaaaaatgcaaattgaagagccactaaaaatttgcaccttattcattaagatatatgtggacctattactcctacttcaaatggtgg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7621498 |
agagattcaattccaaaaatgcaaattgaagagccactaaaaatttgcaccttattcattaagatatatgtggacctattactcctacttcaaatggtgg |
7621399 |
T |
|
| Q |
114 |
aagcatgtatttcataacctttactgatgatttcagtagaaaaacatggacatatccattgatagagaaatccaatgcatttgaaatgtttagaaaattc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7621398 |
aagcatgtatttcataacctttactgatgatttcagtagaaaaacatggacatatccattgatagagaaatccaatgcatttgaaatgtttagaaaattc |
7621299 |
T |
|
| Q |
214 |
aaagcattagttgataaagaatc |
236 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
7621298 |
aaagcattagttgataaagaatc |
7621276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 8922096 - 8922318
Alignment:
| Q |
14 |
agagattcaattccaaaaatgcaaattgaagagccactaaaaatttgcaccttattcattaagatatatgtggacctattactcctacttcaaatggtgg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
8922096 |
agagattcaattccaaaaatgcaaattgaagagccactaaaaagctgcagcttattcattaagatatatgtggacctattaatcctacgtcaaatggtgg |
8922195 |
T |
|
| Q |
114 |
aagcatgtatttcataacctttactgatgatttcagtagaaaaacatggacatatccattgatagagaaatccaatgcatttgaaatgtttagaaaattc |
213 |
Q |
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| T |
8922196 |
aagcatgtatttcataacctttactgatgatttcagtagaaaaacatggacatatccattgatagagaaatctaatgcatttgaaatgtttagaaaattc |
8922295 |
T |
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| Q |
214 |
aaagcattagttgataaagaatc |
236 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
8922296 |
aaagcattagttgataaagaatc |
8922318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 20529823 - 20529870
Alignment:
| Q |
121 |
tatttcataacctttactgatgatttcagtagaaaaacatggacatat |
168 |
Q |
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|||||| | ||||| ||||||||||||||||||||||||||||||||| |
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| T |
20529823 |
tatttcctgaccttcactgatgatttcagtagaaaaacatggacatat |
20529870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 40612164 - 40612089
Alignment:
| Q |
124 |
ttcataacctttactgatgatttcagtagaaaaacatggacatatccattgatagagaaatccaatgcatttgaaa |
199 |
Q |
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|||||||| || | |||||| ||||||||||||||||||||||| ||| | ||||||||| || |||||||||| |
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| T |
40612164 |
ttcataactttcagtgatgacttcagtagaaaaacatggacatacatattaaaagagaaatcaaaggcatttgaaa |
40612089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 27981638 - 27981577
Alignment:
| Q |
124 |
ttcataacctttactgatgatttcagtagaaaaacatggacatatccattgatagagaaatc |
185 |
Q |
| |
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||||| || |||||||||||||| |||||||||||||||| |||| |||| ||||||||| |
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| T |
27981638 |
ttcatgacatttactgatgattttagtagaaaaacatggatatatattttgaaagagaaatc |
27981577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 28038940 - 28038879
Alignment:
| Q |
124 |
ttcataacctttactgatgatttcagtagaaaaacatggacatatccattgatagagaaatc |
185 |
Q |
| |
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||||| || |||||||||||||| |||||||||||||||| |||| |||| ||||||||| |
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| T |
28038940 |
ttcatgacatttactgatgattttagtagaaaaacatggatatatattttgaaagagaaatc |
28038879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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