View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_low_107 (Length: 246)
Name: NF14349_low_107
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_107 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40055399 - 40055173
Alignment:
| Q |
1 |
tttccttagatattcttagtgactatttagatttaaacacttgtctgttaaatttatttcatgtactggtgcatagctcccttactaacactagaattga |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40055399 |
tttccttagatattcttggtgactatttagatttaagcacttgtctgttaaatttatttcatgtactggtgcatagctcccttactaacactagaattga |
40055300 |
T |
|
| Q |
101 |
ctatctacgtaattgcatggaagtgataatgtgtagagatttgttggatactagaggcaaaaatgattttctcacgccannnnnnnataaacagagactt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40055299 |
ctatctacgtaattgcatggaagtgataatgtgtagagatttgttggatactagaggcaaaaatgattttctcacgccatttttttataaacagagactt |
40055200 |
T |
|
| Q |
201 |
tattataaggagtacaagggtgctcaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
40055199 |
tattataaggagtacaagggtgctcaa |
40055173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University