View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_110 (Length: 245)
Name: NF14349_low_110
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_110 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 4785124 - 4784977
Alignment:
| Q |
81 |
atagtcgtctttcgtattcataaaaagataatacttatccttgtagcaccgacacttctgatcgaagacttgtctagtgtccaacatgataccgacaaat |
180 |
Q |
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| T |
4785124 |
atagtagtttttcatattcataaaaggataatacttatctttgtagcaccgacacttctgatcgaagacgtgtctggtgtccaacatgataccgataaat |
4785025 |
T |
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| Q |
181 |
ttaattacattgaattatataatattttctaattattattggagttaa |
228 |
Q |
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| T |
4785024 |
ttaattacattgaattatataatattttctaattattattagagttaa |
4784977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4785245 - 4785160
Alignment:
| Q |
1 |
ttaataaaaacaattgacttataactgtttctctttctttctttcatatgttggtgtaggttatgttgttagtaagaaaaatagtc |
86 |
Q |
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| T |
4785245 |
ttaataaaaaaaattgacttataactgtttctctttctttctttcatatgttggtgtaggttatgttgttagtaagaaaaatagtc |
4785160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 7894797 - 7894743
Alignment:
| Q |
121 |
ttgtagcaccgacacttctgatcgaagacttgtctagtgtccaacatgataccga |
175 |
Q |
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| T |
7894797 |
ttgtagcaccgacacttctgatgaaagacgtgtctagtgttcaacacgacaccga |
7894743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 8100294 - 8100326
Alignment:
| Q |
122 |
tgtagcaccgacacttctgatcgaagacttgtc |
154 |
Q |
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| T |
8100294 |
tgtagcaccgacacttctgatcgaagacgtgtc |
8100326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 35053686 - 35053740
Alignment:
| Q |
122 |
tgtagcaccgacacttctgatcgaagacttgtctagtgtccaacatgataccgac |
176 |
Q |
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| T |
35053686 |
tgtagcaccgacacttctgattgaaggtgtgtctcgtgtccaacatgacaccgac |
35053740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 201595 - 201526
Alignment:
| Q |
131 |
gacacttctgatcgaagacttgtctagtgtccaacatgataccgacaaatttaattacattgaattatat |
200 |
Q |
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| T |
201595 |
gacacttctgattgaagacgtgtcgggtgtccaacatgacactgacacatgtgattacattaaattatat |
201526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 18263600 - 18263568
Alignment:
| Q |
122 |
tgtagcaccgacacttctgatcgaagacttgtc |
154 |
Q |
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| T |
18263600 |
tgtagcaccgacacttctgatcgaagacgtgtc |
18263568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 2648209 - 2648241
Alignment:
| Q |
122 |
tgtagcaccgacacttctgatcgaagacttgtc |
154 |
Q |
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| T |
2648209 |
tgtagcaccgacacttctgatcgaagacatgtc |
2648241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 31681773 - 31681817
Alignment:
| Q |
122 |
tgtagcaccgacacttctgatcgaagacttgtctagtgtccaaca |
166 |
Q |
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| T |
31681773 |
tgtagcaccgacacttatgatcgaagacgtgcccagtgtccaaca |
31681817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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