View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_111 (Length: 245)
Name: NF14349_low_111
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_111 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 3042367 - 3042122
Alignment:
| Q |
1 |
atacaacaaatctaacggtttacagagtaactatctttctttgacttcaaaacgtgttcaaccataacggttaataccgttaaacttccttatcctttta |
100 |
Q |
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| T |
3042367 |
atacaacaaatctaacggtttacagagtaactatctttctttgacttcaaaacgtgttcaaccataacggttaataccgttaaacttccttatcctttta |
3042268 |
T |
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| Q |
101 |
ttcccaaatttctcttaatcaataataaataaatttcttcaattaccaaatcaaagactttacaccatataattatctatttaataatcaaacac-ttag |
199 |
Q |
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| T |
3042267 |
ttccccaatttctcttaatcaataataaataaatttcttcaattaccaaatcaaagactttacactatataattatctatttaataatcaaacactttag |
3042168 |
T |
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| Q |
200 |
tgaaagttcttgcttgctataatattctggatatgactatgaattt |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3042167 |
tgaaagttcttgcttgctataatattctggatatgactatgaattt |
3042122 |
T |
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