View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_113 (Length: 244)

Name: NF14349_low_113
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_113
NF14349_low_113
[»] chr2 (4 HSPs)
chr2 (5-227)||(33364667-33364889)
chr2 (129-227)||(33371023-33371122)
chr2 (40-124)||(33364986-33365072)
chr2 (1-48)||(33364882-33364929)
[»] chr1 (3 HSPs)
chr1 (129-227)||(41433599-41433697)
chr1 (129-227)||(41449948-41450046)
chr1 (129-209)||(41427223-41427303)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 33364889 - 33364667
Alignment:
Q  5 agtctgaatctgaagattggagggatgaagcaccggagtctgaaaattgggttttgagaaaaatgttccttgaccactgatgtagttatgcgggtggtac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  33364889 agtctgaatctgaagattggagggatgaagcaccggagtctgaaaattgggttttgagaaaaatgttccttgaccactgatgcagttatgcgggtggtag 33364790  T
Q  105 gcggtactggagggaggaagcacaaatttctcacagtccttaactccaattcttttaaactctgtgactagataattaacatatccaactaaaccagact 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  33364789 gcggtactggagggaggaagcacaaatttctcacagtccttaactccaattcttacaaactctgtgactagataattaacatatccaactaaaccagact 33364690  T
Q  205 taaatccatctgagcattttcct 227  Q
    |||||||||||||||||||||||    
T  33364689 taaatccatctgagcattttcct 33364667  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 33371122 - 33371023
Alignment:
Q  129 aatttctcacagtccttaactccaattcttttaaactctgtgactagataattaacatatccaactaaaccagacttaaatccatc-tgagcattttcct 227  Q
    ||||||||||||||||||||| ||||||||||||||||| | || |||  ||| |||| |||||||||||||| |||||||  ||| |||||||||||||    
T  33371122 aatttctcacagtccttaacttcaattcttttaaactctttaacaagagtattcacatgtccaactaaaccagccttaaatttatcttgagcattttcct 33371023  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 33365072 - 33364986
Alignment:
Q  40 gagtctgaaaattgggttttgagaaaaat--gttccttgaccactgatgtagttatgcgggtggtacgcggtactggagggaggaag 124  Q
    |||||| ||||||| ||||| | ||||||  |||||||||||||| ||||||||||||| || |||| |||||||||||||||||||    
T  33365072 gagtctcaaaattgagttttaaaaaaaatatgttccttgaccactcatgtagttatgcgagttgtacacggtactggagggaggaag 33364986  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33364929 - 33364882
Alignment:
Q  1 acggagtctgaatctgaagattggagggatgaagcaccggagtctgaa 48  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||    
T  33364929 acggagtctgaatctgaagattggagggatgaagcaacgaagtctgaa 33364882  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 41433697 - 41433599
Alignment:
Q  129 aatttctcacagtccttaactccaattcttttaaactctgtgactagataattaacatatccaactaaaccagacttaaatccatctgagcattttcct 227  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| |||| ||| |||  |||||||||| ||| |||||||  ||||||||| ||||||    
T  41433697 aatttctcacagtccttaactccaattctttcaaactctttgacaagattattcacaagtccaactaaatcagccttaaatttatctgagcactttcct 41433599  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 41450046 - 41449948
Alignment:
Q  129 aatttctcacagtccttaactccaattcttttaaactctgtgactagataattaacatatccaactaaaccagacttaaatccatctgagcattttcct 227  Q
    ||||||||||||||||||||||| ||||||| ||||||  |||| |||| ||| |||| |||||||||||||| |||||||  ||| ||||| ||||||    
T  41450046 aatttctcacagtccttaactccgattctttcaaactccttgaccagattattcacatgtccaactaaaccagccttaaatttatccgagcactttcct 41449948  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 41427303 - 41427223
Alignment:
Q  129 aatttctcacagtccttaactccaattcttttaaactctgtgactagataattaacatatccaactaaaccagacttaaat 209  Q
    ||||||||||||||||||||||||||||||| | |||| ||||| |||   || |||||| |||||||| ||| |||||||    
T  41427303 aatttctcacagtccttaactccaattctttcagactcggtgacaagaattttcacatattcaactaaatcagtcttaaat 41427223  T

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