View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_low_115 (Length: 235)
Name: NF14349_low_115
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_115 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 27158541 - 27158760
Alignment:
| Q |
16 |
atctaacctcaattaacgaacacttgttccttcttctaatatatggttctaccagtaagttcgaacataaattattagttgaatcttcaaattacaattc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27158541 |
atctaacctcaattaacgaacacttgttccttcttctaatatatggttctactagtaagttcgaacataaattattagttgaatcttcaaattacaattc |
27158640 |
T |
|
| Q |
116 |
actgttgattgnnnnnnnnntgagggaattgaacaatcttaataaatgatatgctatatatacttgaggtgctaatgtaaaccacatgtaccgattcaac |
215 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27158641 |
actgttgattgaaaaaaaaaagagggaattgaacaatattaataaatgatttgctatatatacttgaggtgctaatgtaaaccacatgtaccgattcaac |
27158740 |
T |
|
| Q |
216 |
agtgttaattatgaggaggc |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27158741 |
agtgttaattatgaggaggc |
27158760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University