View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_12 (Length: 568)

Name: NF14349_low_12
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_12
NF14349_low_12
[»] chr2 (8 HSPs)
chr2 (23-557)||(40937329-40937860)
chr2 (66-192)||(7347204-7347330)
chr2 (514-550)||(3252622-3252658)
chr2 (504-551)||(1503190-1503236)
chr2 (505-551)||(1506395-1506440)
chr2 (505-551)||(13518606-13518651)
chr2 (504-551)||(11060102-11060149)
chr2 (514-550)||(42368477-42368513)
[»] chr5 (13 HSPs)
chr5 (34-198)||(29529132-29529296)
chr5 (505-551)||(3195396-3195442)
chr5 (217-275)||(29529047-29529106)
chr5 (505-551)||(30761721-30761767)
chr5 (505-551)||(30764540-30764586)
chr5 (505-548)||(33320679-33320722)
chr5 (505-551)||(2453597-2453642)
chr5 (514-551)||(26548395-26548431)
chr5 (514-551)||(26551954-26551990)
chr5 (514-551)||(28562140-28562176)
chr5 (514-551)||(28565708-28565744)
chr5 (514-551)||(34652535-34652571)
chr5 (505-545)||(21915440-21915480)
[»] chr7 (13 HSPs)
chr7 (30-192)||(8755475-8755637)
chr7 (504-551)||(11825123-11825170)
chr7 (504-555)||(5747413-5747464)
chr7 (505-551)||(8398134-8398179)
chr7 (513-550)||(5796850-5796886)
chr7 (514-551)||(5826487-5826523)
chr7 (514-551)||(13809285-13809321)
chr7 (505-550)||(13907569-13907614)
chr7 (514-547)||(18560827-18560860)
chr7 (514-551)||(22232405-22232441)
chr7 (514-551)||(22254298-22254334)
chr7 (514-551)||(23467024-23467060)
chr7 (514-551)||(26153468-26153504)
[»] chr8 (11 HSPs)
chr8 (34-200)||(12314160-12314326)
chr8 (65-196)||(7526036-7526165)
chr8 (66-208)||(9589838-9589980)
chr8 (66-188)||(32238690-32238812)
chr8 (505-551)||(14188475-14188521)
chr8 (34-192)||(7177756-7177913)
chr8 (514-551)||(31981664-31981700)
chr8 (514-551)||(31986591-31986627)
chr8 (514-551)||(45155041-45155077)
chr8 (504-544)||(9467390-9467430)
chr8 (504-551)||(30645789-30645836)
[»] chr1 (8 HSPs)
chr1 (33-190)||(3188694-3188851)
chr1 (33-190)||(3197511-3197668)
chr1 (33-190)||(3206329-3206486)
chr1 (50-193)||(51691057-51691200)
chr1 (34-126)||(48503787-48503879)
chr1 (504-544)||(10765126-10765166)
chr1 (507-547)||(27331543-27331582)
chr1 (504-548)||(50196714-50196758)
[»] scaffold0248 (1 HSPs)
scaffold0248 (34-168)||(18228-18361)
[»] chr3 (11 HSPs)
chr3 (33-118)||(29063129-29063215)
chr3 (60-156)||(32112352-32112448)
chr3 (514-551)||(22993460-22993497)
chr3 (65-112)||(22618378-22618425)
chr3 (505-551)||(25888238-25888283)
chr3 (505-551)||(42354169-42354214)
chr3 (514-551)||(2784423-2784459)
chr3 (514-551)||(4250702-4250738)
chr3 (33-90)||(46338683-46338740)
chr3 (511-551)||(6031203-6031243)
chr3 (514-550)||(7486966-7487002)
[»] chr6 (11 HSPs)
chr6 (505-547)||(11192348-11192390)
chr6 (505-551)||(5617976-5618021)
chr6 (505-551)||(28111568-28111613)
chr6 (514-551)||(6514310-6514346)
chr6 (514-551)||(13005507-13005543)
chr6 (514-551)||(14966534-14966570)
chr6 (514-551)||(14970014-14970050)
chr6 (515-551)||(2372651-2372686)
chr6 (514-550)||(23381947-23381983)
chr6 (514-550)||(23384527-23384563)
chr6 (514-550)||(30655768-30655804)
[»] scaffold0233 (1 HSPs)
scaffold0233 (503-550)||(10252-10298)
[»] scaffold0043 (2 HSPs)
scaffold0043 (505-544)||(13917-13956)
scaffold0043 (505-542)||(11576-11613)
[»] chr4 (10 HSPs)
chr4 (505-544)||(647203-647242)
chr4 (505-544)||(650475-650514)
chr4 (504-551)||(10386248-10386294)
chr4 (505-551)||(11702345-11702390)
chr4 (505-547)||(37739526-37739568)
chr4 (505-547)||(48013154-48013196)
chr4 (514-551)||(10248130-10248166)
chr4 (514-551)||(17670616-17670652)
chr4 (514-551)||(33927283-33927319)
chr4 (505-549)||(37176954-37176999)
[»] scaffold0996 (1 HSPs)
scaffold0996 (514-551)||(1692-1728)
[»] scaffold0034 (1 HSPs)
scaffold0034 (504-549)||(48172-48216)
[»] scaffold0014 (2 HSPs)
scaffold0014 (514-551)||(224023-224059)
scaffold0014 (514-551)||(228949-228985)
[»] scaffold0737 (1 HSPs)
scaffold0737 (514-550)||(7118-7153)
[»] scaffold0035 (1 HSPs)
scaffold0035 (217-260)||(85087-85131)
[»] scaffold0002 (2 HSPs)
scaffold0002 (514-550)||(99008-99044)
scaffold0002 (514-550)||(118222-118258)


Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 23 - 557
Target Start/End: Complemental strand, 40937860 - 40937329
Alignment:
Q  23 ctatctaagaaaacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40937860 ctatctaagaaaacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaatttgca 40937761  T
Q  123 tggaggtcgttcttcaaaaccacgaattcgcatggaaatgactaatatggtaacagttaaacaaattaaagaacttgtatgcaccannnnnnnnaataag 222  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||        ||||||    
T  40937760 tggaggtcgttcttcaaaaccacaaatttgcatggaaatgactaatatggtatcagttaaacaaattaaagaatttgtatgcaccattttttttaataag 40937661  T
Q  223 gcaccaatatgaacccgaaataaagataagagaccaaagtgatgtttaagccattaaattttacatatattacttgatggagnnnnnnnnnnctagttta 322  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||    
T  40937660 gcaccaatatgaacccgaaataaagataagggaccaaagtgatgtttaagccattaaattttacatatattacttgatgg--gaaaaaaaaactagttta 40937563  T
Q  323 atctagcattgtttttagcaaatgggttgtagtttgatccaaattgtgagatgaatccataacagtttgaccaaagctcaaaataaattggaatcgcgca 422  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40937562 atctagcattgtttttagcaaatgggttgtaatttgatccaa-ttgtgggatgaatccataacagtttgaccaaagctcaaaataaattggaatcgcgca 40937464  T
Q  423 agagaaaattgatcgcatcagatatggatgacaacgaataacaaacccttttggattttaaaacaacagatccaacatgacgtgataaatatttagcaag 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40937463 agagaaaattgatcgcatcagatatggatgacaacgaataacaaacctttttggattttaaaacaacagatccaacatgacgtgataaatatttagcaaa 40937364  T
Q  523 tgtactaaaagctatcgaagtaataaaatgttcat 557  Q
    |||||||||||||||||||||||||||||||||||    
T  40937363 tgtactaaaagctatcgaagtaataaaatgttcat 40937329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 7347204 - 7347330
Alignment:
Q  66 ttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgttcttcaaaaccacgaattcgcatggaaatgact 165  Q
    |||||||||||||| |||||||||||||  ||||| |||||||||||||||||  ||||||  |||| ||| ||| ||| ||||||||||| |||||||     
T  7347204 ttcctttctaaaatagttgaacaatgatatagagggtggatccaacacaaattggcatggatctcgtacttaaaagccatgaattcgcatgaaaatgacc 7347303  T
Q  166 aatatggtaacagttaaacaaattaaa 192  Q
    ||| || || || | ||||||||||||    
T  7347304 aatgtgataccaatgaaacaaattaaa 7347330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 3252658 - 3252622
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    ||||||||||||||||||| |||||||||||||||||    
T  3252658 tttagcaagtgtactaaaaactatcgaagtaataaaa 3252622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 551
Target Start/End: Original strand, 1503190 - 1503236
Alignment:
Q  504 gtgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  1503190 gtgataaaattttagcaagtgtactaaaa-ctatcgaagtaataaaat 1503236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Original strand, 1506395 - 1506440
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||    
T  1506395 tgataaaattttagcaagtgtactaaaa-ctatcgaagtaataaaat 1506440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Complemental strand, 13518651 - 13518606
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||    
T  13518651 tgataaacttttagcaagtgtactaaaa-ctatcgaagtaataaaat 13518606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 551
Target Start/End: Complemental strand, 11060149 - 11060102
Alignment:
Q  504 gtgataaatattt-agcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||||||    
T  11060149 gtgataaatattttagcaaatgtactaaaa-ctatcgaagtaataaaat 11060102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Original strand, 42368477 - 42368513
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    ||||||||||||||||||  |||||||||||||||||    
T  42368477 tttagcaagtgtactaaatactatcgaagtaataaaa 42368513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 29529296 - 29529132
Alignment:
Q  34 aacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgtt 133  Q
    |||||||| || ||| ||||||| | |||| ||| |||| | |||||||||||||||| |||| ||| || |||||||| |||||  ||||||  ||||     
T  29529296 aacatgtcgaattcacgaggttcctcatcagctttctttttgaaatcgttgaacaatggtgcaaagggtgcatccaacataaattcacatggatctcgta 29529197  T
Q  134 cttcaaaaccacgaattcgcatggaaatgactaatatggtaacagttaaacaaattaaagaactt 198  Q
    ||||||||||||||||||||||||||| ||| ||  ||||| || ||||||||||||||| ||||    
T  29529196 cttcaaaaccacgaattcgcatggaaaggaccaacgtggtaccaattaaacaaattaaaggactt 29529132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 551
Target Start/End: Complemental strand, 3195442 - 3195396
Alignment:
Q  505 tgataaatattt-agcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  3195442 tgataaatattttagcaagtgtactaaaa-ctatcgaagtaataaaat 3195396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 29529106 - 29529047
Alignment:
Q  217 aataaggcaccaatatgaa-cccgaaataaagataagagaccaaagtgatgtttaagcca 275  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||||  | |||||||||||    
T  29529106 aataagggaccaatatgaatcccgaaataaagataagggaccaaaaaggtgtttaagcca 29529047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 551
Target Start/End: Complemental strand, 30761767 - 30761721
Alignment:
Q  505 tgataaatattt-agcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  30761767 tgataaatatttcagcaagtgtactaaaa-ctatcgaagtaataaaat 30761721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 551
Target Start/End: Complemental strand, 30764586 - 30764540
Alignment:
Q  505 tgataaatattt-agcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  30764586 tgataaatattttagcaagtgtactaaaa-ctatcgaagtaataaaat 30764540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 548
Target Start/End: Original strand, 33320679 - 33320722
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataa 548  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||    
T  33320679 tgatatatatttggcaagtgtaccaaaagctatcgaagtaataa 33320722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Complemental strand, 2453642 - 2453597
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||    
T  2453642 tgataaacttttagcaagtgtactaaaa-ctatcgaagtaataaaat 2453597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 26548431 - 26548395
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  26548431 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 26548395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 26551990 - 26551954
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  26551990 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 26551954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 28562140 - 28562176
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  28562140 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 28562176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 28565708 - 28565744
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  28565708 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 28565744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 34652535 - 34652571
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  34652535 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 34652571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 545
Target Start/End: Complemental strand, 21915480 - 21915440
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaa 545  Q
    ||||| |||||||||||||||||||||| |||| |||||||    
T  21915480 tgatagatatttagcaagtgtactaaaaactattgaagtaa 21915440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 8755475 - 8755637
Alignment:
Q  30 agaaaacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggt 129  Q
    ||||||||||| ||| |||  |||||| | || | |||||||||| ||||||||||||| | ||||||||| || ||||||||||||||  ||||||  |    
T  8755475 agaaaacatgtaaaattcagaaggttcctcataagcttcctttctgaaatcgttgaacattaatgcagagggtgcatccaacacaaattcacatggatct 8755574  T
Q  130 cgttcttcaaaaccacgaattcgcatggaaatgactaatatggtaacagttaaacaaattaaa 192  Q
    ||| |||||||| || |||||||| |||||| |||||| |||||| || |||| |||||||||    
T  8755575 cgtacttcaaaatcaagaattcgcctggaaaggactaacatggtaccaattaagcaaattaaa 8755637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 551
Target Start/End: Original strand, 11825123 - 11825170
Alignment:
Q  504 gtgataaatattt-agcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  11825123 gtgataaatattttagcaagtgtactaaaa-ctatcgaagtaataaaat 11825170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 555
Target Start/End: Original strand, 5747413 - 5747464
Alignment:
Q  504 gtgataaatatttagcaagtgtactaaaagctatcgaagtaataaaatgttc 555  Q
    ||||||||  |||||||| |||||||||| |||| |||||||||||||||||    
T  5747413 gtgataaacttttagcaaatgtactaaaaactattgaagtaataaaatgttc 5747464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Complemental strand, 8398179 - 8398134
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||    
T  8398179 tgataaacttttagcaagtgtactaaaa-ctatcgaagtaataaaat 8398134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 550
Target Start/End: Complemental strand, 5796886 - 5796850
Alignment:
Q  513 atttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    |||||||||||||||||||| |||||||||||||||||    
T  5796886 atttagcaagtgtactaaaa-ctatcgaagtaataaaa 5796850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 5826487 - 5826523
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  5826487 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 5826523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 13809285 - 13809321
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13809285 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 13809321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 550
Target Start/End: Original strand, 13907569 - 13907614
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    ||||| |||||||||||||||||||||| |||| ||||| ||||||    
T  13907569 tgatagatatttagcaagtgtactaaaaactatagaagtgataaaa 13907614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 547
Target Start/End: Original strand, 18560827 - 18560860
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaata 547  Q
    ||||||||||||||||||| ||||||||||||||    
T  18560827 tttagcaagtgtactaaaaactatcgaagtaata 18560860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 22232405 - 22232441
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22232405 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 22232441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 22254334 - 22254298
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22254334 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 22254298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 23467024 - 23467060
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  23467024 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 23467060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 26153504 - 26153468
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  26153504 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 26153468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 12314160 - 12314326
Alignment:
Q  34 aacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgtt 133  Q
    ||||||||||||||| | ||||  | |||| | |||||||| |||||||||||||||| |||| |||||||||| ||||||||||  ||||||  || |     
T  12314160 aacatgtcaaactcaaggggtttctcatcagcctcctttctgaaatcgttgaacaatggtgcaaaggatggatctaacacaaattcgcatggatctcata 12314259  T
Q  134 cttcaaaaccacgaattcgcatggaaatgactaatatggtaacagttaaacaaattaaagaacttgt 200  Q
    | | | ||||||||| | ||||| ||| || |||| ||||| || ||||||||||||||| ||||||    
T  12314260 cataagaaccacgaagttgcatgaaaaggattaatgtggtaccaattaaacaaattaaaggacttgt 12314326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 7526165 - 7526036
Alignment:
Q  65 cttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgttcttcaaaaccacgaattcgcatggaaatgac 164  Q
    |||||||||||||||  |||||||| |||||| | |||  ||||||||||||||   ||  |  |||| |||||||||||| |||||| ||||||| |||    
T  7526165 cttcctttctaaaattattgaacaacgatgcaaatgata-atccaacacaaattcatataaatctcgtacttcaaaaccacaaattcgtatggaaa-gac 7526068  T
Q  165 taatatggtaacagttaaacaaattaaagaac 196  Q
    ||||||  || || ||||||||||||||||||    
T  7526067 taatataataccatttaaacaaattaaagaac 7526036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 9589838 - 9589980
Alignment:
Q  66 ttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgttcttcaaaaccacgaattcgcatggaaatgact 165  Q
    |||| |||| |||||||| ||||||| |||| ||| |||||||||||  ||||| ||||||  |||| ||||| ||||| |||||| || ||||| |||     
T  9589838 ttccattctgaaatcgttaaacaatggtgcaaagggtggatccaacatgaatttgcatggatctcgtacttcagaaccatgaattcacaaggaaaggacc 9589937  T
Q  166 aatatggtaacagttaaacaaattaaagaacttgtatgcacca 208  Q
    || ||| || |  ||||| ||||||||| || | |||||||||    
T  9589938 aacatgttaccgattaaataaattaaaggacctatatgcacca 9589980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 32238690 - 32238812
Alignment:
Q  66 ttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgttcttcaaaaccacgaattcgcatggaaatgact 165  Q
    ||||||| | ||| |||||||||||| |||||||  ||||| |||||||||||  ||||||  |||| ||||| ||| | |||||| |||||||| || |    
T  32238690 ttcctttttgaaaccgttgaacaatggtgcagagagtggatacaacacaaattcacatggatctcgtacttcagaacaatgaattcacatggaaaggaat 32238789  T
Q  166 aatatggtaacagttaaacaaat 188  Q
    || || ||| ||||||| |||||    
T  32238790 aacatagtaccagttaatcaaat 32238812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 551
Target Start/End: Complemental strand, 14188521 - 14188475
Alignment:
Q  505 tgataaatattt-agcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  14188521 tgataaatattttagcaagtgtactaaaa-ctatcgaagtaataaaat 14188475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 192
Target Start/End: Complemental strand, 7177913 - 7177756
Alignment:
Q  34 aacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgtt 133  Q
    ||||||||||| ||| ||||||  | ||||  ||||||||| || ||||  |||||||  ||||| | |||||||||||| ||||  ||| ||  ||||     
T  7177913 aacatgtcaaattcacgaggtttctcatcagtttcctttctgaa-tcgtcaaacaatggcgcagaaggtggatccaacacgaattcacattgatctcgta 7177815  T
Q  134 cttcaaaaccacgaattcgcatggaaatgactaatatggtaacagttaaacaaattaaa 192  Q
    ||||||||   | |||||||||| |||||||||| ||| || || ||||||||||||||    
T  7177814 cttcaaaatatcaaattcgcatgaaaatgactaacatgataccaattaaacaaattaaa 7177756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 31981700 - 31981664
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  31981700 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 31981664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 31986627 - 31986591
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  31986627 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 31986591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 45155041 - 45155077
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  45155041 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 45155077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 544
Target Start/End: Complemental strand, 9467430 - 9467390
Alignment:
Q  504 gtgataaatatttagcaagtgtactaaaagctatcgaagta 544  Q
    |||||| |||||| |||||||||| ||||||||||||||||    
T  9467430 gtgatagatatttggcaagtgtaccaaaagctatcgaagta 9467390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 551
Target Start/End: Complemental strand, 30645836 - 30645789
Alignment:
Q  504 gtgataaatattt-agcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  30645836 gtgataaatattttagcaagtgtactaaaa-ttatcgaagtaataaaat 30645789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 3188694 - 3188851
Alignment:
Q  33 aaacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgt 132  Q
    |||||||||||| ||| ||| ||| | |||| |||||||||| ||||||||||||||||||| | ||||| |||| ||||||||||  ||||||  ||||    
T  3188694 aaacatgtcaaattcacgagtttcgtcatcagcttcctttctgaaatcgttgaacaatgatgtataggatagatcaaacacaaattcacatggacctcgt 3188793  T
Q  133 tcttcaaaaccacgaattcgcatggaaatgactaatatggtaacagttaaacaaatta 190  Q
     ||| |||||||  |||| ||||||||| ||| ||  ||||| || |||||| |||||    
T  3188794 actttaaaaccattaatttgcatggaaaggacaaacgtggtaccaattaaaccaatta 3188851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 3197511 - 3197668
Alignment:
Q  33 aaacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgt 132  Q
    |||||||||||| ||| ||| ||| | |||| |||||||||| ||||||||||||||||||| | ||||| |||| ||||||||||  ||||||  ||||    
T  3197511 aaacatgtcaaattcacgagtttcgtcatcagcttcctttctgaaatcgttgaacaatgatgtataggatagatcaaacacaaattcacatggacctcgt 3197610  T
Q  133 tcttcaaaaccacgaattcgcatggaaatgactaatatggtaacagttaaacaaatta 190  Q
     ||| |||||||  |||| ||||||||| ||| ||  ||||| || |||||| |||||    
T  3197611 actttaaaaccattaatttgcatggaaaggacaaacgtggtaccaattaaaccaatta 3197668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 3206329 - 3206486
Alignment:
Q  33 aaacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgt 132  Q
    |||||||||||| ||| ||| ||| | |||| |||||||||| ||||||||||||||||||| | ||||| |||| ||||||||||  ||||||  ||||    
T  3206329 aaacatgtcaaattcacgagtttcgtcatcagcttcctttctgaaatcgttgaacaatgatgtataggatagatcaaacacaaattcacatggacctcgt 3206428  T
Q  133 tcttcaaaaccacgaattcgcatggaaatgactaatatggtaacagttaaacaaatta 190  Q
     ||| |||||||  |||| ||||||||| ||| ||  ||||| || |||||| |||||    
T  3206429 actttaaaaccattaatttgcatggaaaggacaaacgtggtaccaattaaaccaatta 3206486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 193
Target Start/End: Complemental strand, 51691200 - 51691057
Alignment:
Q  50 gaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgttcttcaaaaccacgaat 149  Q
    ||||||| | |||| |||||||| | |||| ||||||||||||| || | | |||||||||||||||||  ||||||  |||| ||| ||||||  ||||    
T  51691200 gaggttcctcatcatcttcctttgtgaaatagttgaacaatgatacacaaggtggatccaacacaaattcacatggaactcgtacttaaaaaccttgaat 51691101  T
Q  150 tcgcatggaaatgactaatatggtaacagttaaacaaattaaag 193  Q
    || |||| ||| ||| ||| || || || |||||||||||||||    
T  51691100 tcacatgaaaaggaccaatgtgataccaattaaacaaattaaag 51691057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 48503879 - 48503787
Alignment:
Q  34 aacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatgga 126  Q
    ||||||||||| | || |||||  | |||||||| |||| | ||||||||||||||| ||||| ||| | |||||||||||||||| ||||||    
T  48503879 aacatgtcaaatttataaggtttctcatcaactttctttatgaaatcgttgaacaattatgcaaagggttgatccaacacaaatttgcatgga 48503787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 544
Target Start/End: Complemental strand, 10765166 - 10765126
Alignment:
Q  504 gtgataaatatttagcaagtgtactaaaagctatcgaagta 544  Q
    |||||| |||||| |||||||||| ||||||||||||||||    
T  10765166 gtgatagatatttggcaagtgtaccaaaagctatcgaagta 10765126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 547
Target Start/End: Original strand, 27331543 - 27331582
Alignment:
Q  507 ataaatatttagcaagtgtactaaaagctatcgaagtaata 547  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  27331543 ataaatatttagcaagtgtcctaaaa-ctatcgaagtaata 27331582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 548
Target Start/End: Original strand, 50196714 - 50196758
Alignment:
Q  504 gtgataaatatttagcaagtgtactaaaagctatcgaagtaataa 548  Q
    ||||||||||||| |||||||||| |||| |||| ||||||||||    
T  50196714 gtgataaatatttggcaagtgtaccaaaaactattgaagtaataa 50196758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 18228 - 18361
Alignment:
Q  34 aacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgtt 133  Q
    ||||||||||  ||| ||||||  | ||||||||||||| |||||||| ||||||  | |||| ||||||||||||| |||||||   |||||  ||||     
T  18228 aacatgtcaagttcaagaggtttctcatcaacttcctttataaaatcggtgaacaggg-tgcaaaggatggatccaaaacaaattcgtatggatctcgta 18326  T
Q  134 cttcaaaaccacgaattcgcatggaaatgactaat 168  Q
     |||||||||||||||||||||||||| |||||||    
T  18327 tttcaaaaccacgaattcgcatggaaaggactaat 18361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 29063129 - 29063215
Alignment:
Q  33 aaacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaaca--atgatgcagaggatggatccaacacaaatt 118  Q
    |||||||||||| ||| ||||||| | ||||||||||||||| |||| ||||||||  |||||||||| ||||||||||||| |||||    
T  29063129 aaacatgtcaaattcacgaggttc-tcatcaacttcctttctgaaattgttgaacaatatgatgcagaagatggatccaacataaatt 29063215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 32112352 - 32112448
Alignment:
Q  60 atcaacttcctttctaaaatcgttgaacaatgatgcagaggatggatccaacacaaattttcatggaggtcgttcttcaaaaccacgaattcgcatg 156  Q
    ||||||||||||||||||| ||| |||||||| || ||||| |||||||||||||||||| | ||||  | |   ||||||||||||||||| ||||    
T  32112352 atcaacttcctttctaaaaccgtagaacaatggtgtagagggtggatccaacacaaatttacgtggatcttgaatttcaaaaccacgaattcacatg 32112448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 22993460 - 22993497
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22993460 tttagcaagtgtactaaaaactatcgaagtaataaaat 22993497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 22618378 - 22618425
Alignment:
Q  65 cttcctttctaaaatcgttgaacaatgatgcagaggatggatccaaca 112  Q
    |||||||||| ||||| ||||||||||||||| ||| |||||||||||    
T  22618378 cttcctttctgaaatcattgaacaatgatgcatagggtggatccaaca 22618425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Original strand, 25888238 - 25888283
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||| |||||||||| |||||||| ||||||||||||||||||    
T  25888238 tgataaatttttagcaagtatactaaaa-ctatcgaagtaataaaat 25888283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Original strand, 42354169 - 42354214
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||    
T  42354169 tgataaacttttagcaagtgtactaaaa-ctatcgaagtaataaaat 42354214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 2784459 - 2784423
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  2784459 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 2784423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 4250738 - 4250702
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  4250738 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 4250702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 46338740 - 46338683
Alignment:
Q  33 aaacatgtcaaactcatgaggttcatgatcaacttcctttctaaaatcgttgaacaat 90  Q
    |||||||||||| ||| ||||||| | |||| |||||||| | |||||||||||||||    
T  46338740 aaacatgtcaaattcacgaggttcctcatcagcttcctttttgaaatcgttgaacaat 46338683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 551
Target Start/End: Complemental strand, 6031243 - 6031203
Alignment:
Q  511 atatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||| ||||||||||||||  |||||||||||||||||    
T  6031243 atatttaacaagtgtactaaaaattatcgaagtaataaaat 6031203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 7487002 - 7486966
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    ||||||||||||||||||  |||||||||||||||||    
T  7487002 tttagcaagtgtactaaatactatcgaagtaataaaa 7486966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 547
Target Start/End: Original strand, 11192348 - 11192390
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaata 547  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  11192348 tgatagatatttagcaagtgtactaaaaactatcgaagtaata 11192390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Original strand, 5617976 - 5618021
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||    
T  5617976 tgataaacttttagcaagtgtactaaaa-ctatcgaagtaataaaat 5618021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Original strand, 28111568 - 28111613
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||    
T  28111568 tgataaacttttagcaagtgtactaaaa-ctatcgaagtaataaaat 28111613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 6514346 - 6514310
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  6514346 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 6514310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 13005543 - 13005507
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13005543 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 13005507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 14966570 - 14966534
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  14966570 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 14966534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 14970050 - 14970014
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  14970050 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 14970014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 551
Target Start/End: Complemental strand, 2372686 - 2372651
Alignment:
Q  515 ttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2372686 ttagcaagtgtactaaaa-ctatcgaagtaataaaat 2372651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Original strand, 23381947 - 23381983
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    ||||||||||||||||||  |||||||||||||||||    
T  23381947 tttagcaagtgtactaaatactatcgaagtaataaaa 23381983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Original strand, 23384527 - 23384563
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    ||||||||||||||||||  |||||||||||||||||    
T  23384527 tttagcaagtgtactaaatactatcgaagtaataaaa 23384563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Complemental strand, 30655804 - 30655768
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    ||||||||||||||||||  |||||||||||||||||    
T  30655804 tttagcaagtgtactaaatactatcgaagtaataaaa 30655768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 550
Target Start/End: Complemental strand, 10298 - 10252
Alignment:
Q  503 cgtgataaatatttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  10298 cgtgatagatatttagcaagtgtactaaaa-ctatcaaagtaataaaa 10252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 544
Target Start/End: Complemental strand, 13956 - 13917
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagta 544  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  13956 tgataaatatttggcaagtgtaccaaaagctatcgaagta 13917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 542
Target Start/End: Complemental strand, 11613 - 11576
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaag 542  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  11613 tgataaatatttggcaagtgtaccaaaagctatcgaag 11576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 544
Target Start/End: Original strand, 647203 - 647242
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagta 544  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  647203 tgataaatatttggcaagtgtaccaaaagctatcgaagta 647242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 544
Target Start/End: Original strand, 650475 - 650514
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagta 544  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  650475 tgataaatatttggcaagtgtaccaaaagctatcgaagta 650514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 504 - 551
Target Start/End: Complemental strand, 10386294 - 10386248
Alignment:
Q  504 gtgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  10386294 gtgataaacttttagcaagtgtactaaaa-ctatcgaagtaataaaat 10386248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 551
Target Start/End: Original strand, 11702345 - 11702390
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||    
T  11702345 tgataaaattttagcaagtgtactaaaa-ctatcgaagtaataaaat 11702390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 547
Target Start/End: Original strand, 37739526 - 37739568
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaata 547  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||    
T  37739526 tgatagatatttagcaagtgtattaaaaactatcgaagtaata 37739568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 547
Target Start/End: Original strand, 48013154 - 48013196
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcgaagtaata 547  Q
    ||||| || ||||||||||||||||||| ||||||||||||||    
T  48013154 tgatagatgtttagcaagtgtactaaaaactatcgaagtaata 48013196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 10248166 - 10248130
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10248166 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 10248130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 17670652 - 17670616
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  17670652 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 17670616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 33927319 - 33927283
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  33927319 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 33927283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 549
Target Start/End: Complemental strand, 37176999 - 37176954
Alignment:
Q  505 tgataaatatttagcaagtgtactaaaagctatcga-agtaataaa 549  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||    
T  37176999 tgataaatatttggcaagtgtaccaaaagctatcgatagtaataaa 37176954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0996 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 1692 - 1728
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  1692 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 1728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 48172 - 48216
Alignment:
Q  504 gtgataaatatttagcaagtgtactaaaagctatcgaagtaataaa 549  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||    
T  48172 gtgatagatatttagcaagtgtactaaaa-ctattgaagtaataaa 48216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 224059 - 224023
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  224059 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 224023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 551
Target Start/End: Complemental strand, 228985 - 228949
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaat 551  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  228985 tttagcaagtgtactaaaa-ctatcgaagtaataaaat 228949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Original strand, 7118 - 7153
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    ||||||||||||||||||| |||||||||||||||||    
T  7118 tttagcaagtgtactaaaa-ctatcgaagtaataaaa 7153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 85131 - 85087
Alignment:
Q  217 aataaggcaccaatatgaaccc-gaaataaagataagagaccaaa 260  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||||    
T  85131 aataagggaccaatataaaccccgaaataaagataagagaccaaa 85087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Original strand, 99008 - 99044
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    |||||||||||||||||||  ||||||||||||||||    
T  99008 tttagcaagtgtactaaaaattatcgaagtaataaaa 99044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 550
Target Start/End: Original strand, 118222 - 118258
Alignment:
Q  514 tttagcaagtgtactaaaagctatcgaagtaataaaa 550  Q
    |||| |||||||||||||| |||||||||||||||||    
T  118222 tttaacaagtgtactaaaaactatcgaagtaataaaa 118258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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