View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_121 (Length: 226)
Name: NF14349_low_121
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_121 |
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| [»] chr1 (3 HSPs) |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 47574689 - 47574920
Alignment:
| Q |
1 |
ttggcatggctagaattgtatcagtagatcaaattgaagaaaatacatgcacaattgtagggacatagtaagtttctaattcctactttacttcattcaa |
100 |
Q |
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| T |
47574689 |
ttggcatggctagaattgtatcagtagatcaaattgaagaaaatacatgcacaattgtagggacatagtaagtttctaattcctactttacttcattcaa |
47574788 |
T |
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| Q |
101 |
tttctcatgtctattactttattttacctaaaaataattttc------attcattgatgcccactaaacaggctttcttgttttcatatgtagtggatat |
194 |
Q |
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| T |
47574789 |
tttctcatgtctattactttattttacctaaaaataattttcattcatattcattgatgcccactaaacaggctttcttgttttcatatgtagtggatat |
47574888 |
T |
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| Q |
195 |
atatctccagaatatgcaatgcatggatattt |
226 |
Q |
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| T |
47574889 |
atatctccataatatgcaatgcatggatattt |
47574920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 47584389 - 47584487
Alignment:
| Q |
1 |
ttggcatggctagaattgtatcagtagatcaaattgaagaaaatacatgcacaattgtagggacatagtaagtttctaattcctactttacttcattca |
99 |
Q |
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| T |
47584389 |
ttggcatggctagaattgtatctatagatcaaattgaagaaagcacgtgcacgattgtaggaacatagtaagcttacgattcctactttactttattca |
47584487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 47584535 - 47584602
Alignment:
| Q |
157 |
actaaacaggctttcttgtttt-catatgtagtggatatatatctccagaatatgcaatgcatggata |
223 |
Q |
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| T |
47584535 |
actaaacaaactttctcgtttttcatatatagtggttatatatctccagaatatgccatgcatggata |
47584602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 31176907 - 31176867
Alignment:
| Q |
186 |
agtggatatatatctccagaatatgcaatgcatggatattt |
226 |
Q |
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| T |
31176907 |
agtggatatatggctccagaatatgcaatgcacggatattt |
31176867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 31188202 - 31188162
Alignment:
| Q |
186 |
agtggatatatatctccagaatatgcaatgcatggatattt |
226 |
Q |
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| T |
31188202 |
agtggatatatggctccagaatatgcaatgcacggatattt |
31188162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 31196258 - 31196218
Alignment:
| Q |
186 |
agtggatatatatctccagaatatgcaatgcatggatattt |
226 |
Q |
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| T |
31196258 |
agtggatatatggctccagaatatgcaatgcacggatattt |
31196218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 31214870 - 31214830
Alignment:
| Q |
186 |
agtggatatatatctccagaatatgcaatgcatggatattt |
226 |
Q |
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| T |
31214870 |
agtggatatatggctccagaatatgcaatgcacggatattt |
31214830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 31229687 - 31229647
Alignment:
| Q |
186 |
agtggatatatatctccagaatatgcaatgcatggatattt |
226 |
Q |
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| T |
31229687 |
agtggatatatggctccagaatatgcaatgcacggatattt |
31229647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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