View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_low_13 (Length: 535)
Name: NF14349_low_13
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 321 - 523
Target Start/End: Complemental strand, 48250909 - 48250706
Alignment:
| Q |
321 |
cgaggaggaagataaggcaaagcagagcagcgagtaacgttggtggttgtcaatagccgatgaggaactaacactgtgcctgcacttgctgcaaccgcca |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48250909 |
cgaggaggaagataaggcaaagcagagcagcgagtaacgttggtggttgtcaatagccgatgaggaactaacactgtgcctgcacttgctgcaaccgcca |
48250810 |
T |
|
| Q |
421 |
ttgtctctcacttttcttcactgttatcctt-ttttcctatgttaagaattaagattcaatgtttttgtttgtttgaggaaaatagagaaaccacccttt |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48250809 |
ttgtctctcacttttcttcactgttatcctttttttcctatgttaagaattaagattcaatgtttttgtttgtttgaggaaaatagagaaaccacccttt |
48250710 |
T |
|
| Q |
520 |
gctt |
523 |
Q |
| |
|
|||| |
|
|
| T |
48250709 |
gctt |
48250706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 48251248 - 48251026
Alignment:
| Q |
15 |
acataatttaggaaataaattgaaatacatatataaacnnnnnnngaagcagatgaactagtagcttgaaatgagcattgaaagtagaacttgaacttg- |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48251248 |
acataatttaggaaataaattgaaatacataaacaaa--aaaaaagaagcagatgaactagtagcttgaaatgagcattgaaagtagaacttgaacttga |
48251151 |
T |
|
| Q |
114 |
-----tattcagctacatgttaacttaaagtcacactggaatttggattttca-----------agatgatagattagatagcttatgaaaacaaattat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48251150 |
acttgtattcagctacatgttaacttaaagtcaaactggaatttggattttcataagctcttcaagatgatagattagatagcttatgaaaacaaattat |
48251051 |
T |
|
| Q |
198 |
attagcttaaacgaaaatataagct |
222 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48251050 |
attagcttaaacgaaaatataagct |
48251026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University