View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_14 (Length: 531)
Name: NF14349_low_14
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Original strand, 36775840 - 36776368
Alignment:
| Q |
1 |
tttgatcaatgttgttcctttgattcctaatgatcaacaaaatagtattagcaacaaggttattgtctataggaacatgaacatatatcaaggttcaaat |
100 |
Q |
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| T |
36775840 |
tttgatcaatgttgttcctttgattcctaatgatcaacaaaatagtattagcaacaaggttattgtctataggaacatgaacatatatcaaggttcaaat |
36775939 |
T |
|
| Q |
101 |
gaagcatcaaaagatttacaacacttgtttgttttgagtgagaaaaataaggattacttggttcacaattttgggttatgcaaagcttctagagctacaa |
200 |
Q |
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| T |
36775940 |
gaagcatcaaaagatttacaacacttgtttgttttgagtgagaaaaataaggattacttggttcacaattttgggttatgcaaagcttctagagctacaa |
36776039 |
T |
|
| Q |
201 |
ggtcttttcttttaagggacccttgc----tacattgctacttgaccactcttttattatttatttattcatccatgtcatgtcattttatctcctttaa |
296 |
Q |
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| T |
36776040 |
ggtcttttcttttaagggacccttgctacgtacattgctacttgaccactcttttattatttatttattcatccatgtcatgtcattttatctccttt-a |
36776138 |
T |
|
| Q |
297 |
aaagataatggaaagggagagaaaattatcatatttgtaaattattgttgtattatatttcttttatgtctatggtattattgatcattttnnnnnnnnn |
396 |
Q |
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| T |
36776139 |
aaagataatggaaagggagagaaaattatcatatttgtaaattattgttgtattatatttcttttatgtctatggtattattgatcatttt-aaaacaaa |
36776237 |
T |
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| Q |
397 |
nnngtctatggtattgccaattacacaactaacctatagtttaaggttcatctatataactcgttttgacagtcttgtcatcatgcttaaattacgatca |
496 |
Q |
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| T |
36776238 |
aaagtctatggtattgccaattacacaactaacctatagtttaaggttcatctatataactcgttttgacagtcttgtcatcatgcttaaattacgatca |
36776337 |
T |
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| Q |
497 |
ttatatttgaacacttcatattcttcgacat |
527 |
Q |
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| T |
36776338 |
ttatatttgaacacttcatattcttctacat |
36776368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 70 - 376
Target Start/End: Original strand, 36788735 - 36789045
Alignment:
| Q |
70 |
taggaacatgaacatatatcaaggttcaaatgaagcatcaaaagatttacaacacttgtttgttttgagtgagaaaaataaggattacttggttcacaat |
169 |
Q |
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| T |
36788735 |
taggaacatgaacatatatcaaggttcaaatgaagcatcacaagatttaccacacttgtttgttttgagtgggaaaaataaggataagttggttcacgat |
36788834 |
T |
|
| Q |
170 |
tttgggttatgcaaagcttctagagctacaaggtcttttcttttaagggacccttgctacattgctacttgaccactc---ttttattatttatttattc |
266 |
Q |
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| T |
36788835 |
ttgaggttttgcaaagattatagagctacaaggtcttttttgttaagggacccttgttacattgctacctgaccactcttttttttttttttaattattc |
36788934 |
T |
|
| Q |
267 |
atccatgtcatgtcattttatctcctttaaaaagataatggaaagg-gagagaaaattatcatatttgtaaattattgttgtat--tatatttcttttat |
363 |
Q |
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| T |
36788935 |
atccatgtcatgttattttatctcctt--aaaagaaaatggaaaggaaagaggaaaatatcatatttgtaaattattgttgtattatatatttcttttat |
36789032 |
T |
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| Q |
364 |
gtctatggtatta |
376 |
Q |
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| T |
36789033 |
gtctatggtatta |
36789045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 36760715 - 36760907
Alignment:
| Q |
25 |
tcctaatgatcaacaaaatagtattagcaacaaggttatt------gtctataggaacatgaacatatatcaa---ggttcaaatgaagcatcaaaagat |
115 |
Q |
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| T |
36760715 |
tcctagtgatcaacaaaatagtattagcaacaaggttgttaacgttgtctctggaaacatgaacataaatcaattagcttcaaatgaagcatcacaagat |
36760814 |
T |
|
| Q |
116 |
ttacaacacttgtttgttttgagtgagaaaaataaggattacttggttcacaattttgggttatgcaaagcttctagagctacaaggtctttt |
208 |
Q |
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| T |
36760815 |
tcacaacagttgtttgttttgagaggtgtgaataaggattatttggttcatagtttgaagttttgcaaggattctagaactacaaggtctttt |
36760907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 36797138 - 36797193
Alignment:
| Q |
47 |
attagcaacaaggttattgtctataggaacatgaacatatatcaaggttcaaatga |
102 |
Q |
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| T |
36797138 |
attagcaacaaggtttgtgtctctgggaacatgaacataaatcaagtttcaaatga |
36797193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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