View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_15 (Length: 530)
Name: NF14349_low_15
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 75 - 261
Target Start/End: Original strand, 36709327 - 36709512
Alignment:
| Q |
75 |
caatgtaaagttctcttannnnnnncccagcctcaataaactacattcataaaattaaaacataaaaaacatctcttcagcagattgggtccacagacag |
174 |
Q |
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| T |
36709327 |
caatgtaaagttctcttatttttttcccagcctcaataaactacattcataaaattaaaacataaaaaacatctcttcagcagattgg-tccacaggcag |
36709425 |
T |
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| Q |
175 |
cggcggggagtcagagacacagggtagtgacgcggatcacttcttcatcatccattggtggaggtaaattcaaatcaatagcaaaca |
261 |
Q |
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| T |
36709426 |
cggcggggagtcagagacacagggtagtgacgcggatcacttcttcatcatccattggtggaggtaaattcaaatcaatagcaaaca |
36709512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 328 - 514
Target Start/End: Original strand, 36709567 - 36709765
Alignment:
| Q |
328 |
gcttcctcactgaagcggcagaagaactgagaataacacaatcttcgtcatcatcaacaacagatgaagatgaatcacaaccactatgaaaatcttcacc |
427 |
Q |
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| T |
36709567 |
gcttcctcactgaagcggcagaagaactgagaataacacaatcttcgtcatcatcaacaacagatgaagatgaatcacaaccactatgaaaatcttcacc |
36709666 |
T |
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| Q |
428 |
agcacgagcaccagcagcaccaacagcttgagcaact------------ccaccaccaacagtaggaaccctggaaacaacagaagaagacgaagaacc |
514 |
Q |
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| T |
36709667 |
agcaccagcaccagcaccaccaacagcttgagcaactccaccaccagcaccaccaccaacagtaggaaccctggaaacaacagaagaagacgaagaacc |
36709765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 328 - 514
Target Start/End: Original strand, 36722439 - 36722634
Alignment:
| Q |
328 |
gcttcctcactgaagcggcagaagaactgagaataacacaatcttcgtcatcatcaacaacagatgaagatgaatcacaaccactatgaaaatcttcacc |
427 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||| | || || |
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| T |
36722439 |
gcttcctcactgaagcagtagaagaactgagaataacacaattttcgtcatcatcaacagcagatgtagatgaatcacagccactatgaaattttttgcc |
36722538 |
T |
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| Q |
428 |
agcacgagcaccagcagcaccaacagcttgagcaactccaccac---------caacagtaggaaccctggaaacaacagaagaagacgaagaacc |
514 |
Q |
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| T |
36722539 |
agcacgagcagcagcagcaccaacaggttgagcagctccaccaccagcaccagcaacaataggaaccctggaaacagcagaagaagacgaagaacc |
36722634 |
T |
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