View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_16 (Length: 527)
Name: NF14349_low_16
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_16 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 15 - 511
Target Start/End: Complemental strand, 43879620 - 43879135
Alignment:
| Q |
15 |
acttttaatttgccatatgctacaaatttaagatcttttaagacttcatttcatttgtgttctctcaccttatcaaacaccttaataagatttgaaacca |
114 |
Q |
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| T |
43879620 |
acttttattttgccctatgctacaaatttaagatcttttaagacttcatttcatttgtgttctctcaccttatcaaacaccttaataagatttgaaacta |
43879521 |
T |
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| Q |
115 |
tagattcaaataaagctttcaagatggaaaaaattcttatagatgaatgacattataaattcaattcaattcatgcataaagttt-aatataggtgaaat |
213 |
Q |
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| T |
43879520 |
tagattcaaataaagctttcaagatggaaaaaattcttatagatgaatgacattataaattcaattca-----tgcataaagttttaatataggtgaaat |
43879426 |
T |
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| Q |
214 |
tcaaaccaaacaaactcaaactcttcaacatacatactagttgaagtaaaatatatagaagtcacacnnnnnnntggtgaaagtaaaacagatttcattc |
313 |
Q |
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| T |
43879425 |
tcaaaccaaacaaactcaaactcttcaacatacatactagttgaagtaaaata----gaagtcacacaaaaaaatggtgaaagtaaaacagatttcattc |
43879330 |
T |
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| Q |
314 |
atatacaccacaagaattaagatttatattattatctacaacctgattgatccaaatcttccctttgactttgatcgtttgatgctgacagaggattgtg |
413 |
Q |
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| T |
43879329 |
atatacaccacaagaattaagatttatattat---ctacaacctgattgatccaaatcttccctttgactttgatcgtttgatgctgacagaggattgtg |
43879233 |
T |
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| Q |
414 |
aaacagacaattctgagtgcatgtcagtgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttct |
511 |
Q |
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| T |
43879232 |
aaacagacaattctgagtgcatgtcagtgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttct |
43879135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 1894073 - 1894015
Alignment:
| Q |
311 |
ttcatatacaccacaagaattaagatttatattattatctacaacctgattgatccaaat |
370 |
Q |
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| T |
1894073 |
ttcatatacaccacaagaattaagatttatgcta-tatctacaacctggttgatctaaat |
1894015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 13158 - 13228
Alignment:
| Q |
441 |
tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttct |
511 |
Q |
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| T |
13158 |
tgaaaaacctgtccacaatatcgagataaactggacttttaaggcgagaatagtagtgaagtgcttcttct |
13228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 510
Target Start/End: Original strand, 7574 - 7643
Alignment:
| Q |
441 |
tgaaaaacttgtcgacaatatctaaataaataggactcttgagacgagaataatagtgaagtgcttcttc |
510 |
Q |
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| T |
7574 |
tgaaaaacctgttcacaatatctagataaaccggacttttaaggcgagaatagtagtgaagtgcttcttc |
7643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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