View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_18 (Length: 509)
Name: NF14349_low_18
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 4 - 496
Target Start/End: Complemental strand, 1892846 - 1892352
Alignment:
| Q |
4 |
gggaactctttcaagatatgcacctgtgaaatgaatataggattatgaactgaaactttttagaattatannnnnnnaagctctcatttatgaaatataa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
1892846 |
gggaactctttcaagatatgcacctgtgaaatgaatataggattatgaactgaaactttttagaattaaaattttttaagctctcatttatgaaatataa |
1892747 |
T |
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| Q |
104 |
atgatgagagaattgaggaagtcaattttcacattctggcaaatattatgtagcaccgacgtagacacgtgtggttacatttaggttgaaaataaattga |
203 |
Q |
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| T |
1892746 |
atgatgagagaattgaggtagtcaattttcacattctggcaaatattatgtagcaccgacgtagacacgtgtggttacatttaggttgaaaataaattga |
1892647 |
T |
|
| Q |
204 |
aaatcaaaccatcaaattgaaccaaactgaactgtgactgacagttcacaaattgaacaggttcagcttgtgaactatctgtaacgattcagttcttttc |
303 |
Q |
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| T |
1892646 |
aaaccaaaccatcaaattgaaccaaactgaactgtgactgacagttcacaaattgaacaggttcagctcgtgaactatctgtaacaattcagttcttttc |
1892547 |
T |
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| Q |
304 |
agtgtcattcggttcg-nnnnnnnnagtacttttataaacaactctgacattcaatttggattggttttggaagcaatttgaaacagtttggttcagaaa |
402 |
Q |
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| T |
1892546 |
agtgtcattcggttcgtttttttttagtacttttataaacaactctgacattcaatttggattggttttggaagcaatttgaaacagtttggttcagaaa |
1892447 |
T |
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| Q |
403 |
gaatcagtaaggttataaaaagtatagttca-nnnnnnnaacgtcgatcatgtttggtttgaaatcacataataggtgcatcgaacgtttatatt |
496 |
Q |
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| T |
1892446 |
gaatcagtaaggttataaaaagtatagttcattttttttaacgtcgatcatgtttggtttgaaatcacataataggtgcatcgaacgtttatatt |
1892352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1880705 - 1880652
Alignment:
| Q |
1 |
tctgggaactctttcaagatatgcacctgtgaaatgaatataggattatgaact |
54 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1880705 |
tctgagaactctttcaagatatgcacctgtgaaatgaatataggattaggaact |
1880652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1903478 - 1903434
Alignment:
| Q |
1 |
tctgggaactctttcaagatatgcacctgtgaaatgaatatagga |
45 |
Q |
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| T |
1903478 |
tctgggaactctttcaagatatgtacctgtgaaatgaataaagga |
1903434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1907711 - 1907667
Alignment:
| Q |
1 |
tctgggaactctttcaagatatgcacctgtgaaatgaatatagga |
45 |
Q |
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| T |
1907711 |
tctgggaactctttcaagatatgtacctgtgaaatgaataaagga |
1907667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1913553 - 1913516
Alignment:
| Q |
1 |
tctgggaactctttcaagatatgcacctgtgaaatgaa |
38 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
1913553 |
tctgggaactctttcaagatatgtacctgtgaaatgaa |
1913516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1898178 - 1898134
Alignment:
| Q |
1 |
tctgggaactctttcaagatatgcacctgtgaaatgaatatagga |
45 |
Q |
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|||||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
1898178 |
tctgggaactctttcatgatatgtacctgtgaaatgaataaagga |
1898134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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