View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_19 (Length: 506)
Name: NF14349_low_19
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 5957894 - 5958384
Alignment:
| Q |
1 |
atgaataaggagaaggtgcagactagaggggtgaagtttgattcggggtttcggactgggtgtagttatatgaaggtgaagtttgatgatgatgggaaga |
100 |
Q |
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| T |
5957894 |
atgaataaggagaaggtgcagactagaggggtgaagtttgattcggggtttcggactgggtgtagttatatgaaggtgaagtttgatgatgatgggaaga |
5957993 |
T |
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| Q |
101 |
tggggatggagattgttaaggaatgtgctgaggattctcttaggagtgatgaattgaatcttgctgttttgaaagaggttttgttttttagctttaaatt |
200 |
Q |
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| T |
5957994 |
tggggatggagattgttaaggaatgtgctgaggattctcttaggagtgatgaattgaatcttgctgttttgaaagaggttttgttttttagctttaaatt |
5958093 |
T |
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| Q |
201 |
acttgcattgttaattgttactatttttgacacttatatttgcttannnnnnnactcaaaaacatagttattaatattaggtaagatgtgatatgaaaat |
300 |
Q |
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| T |
5958094 |
acttgcattgttaattgttactatttttgacacttatatttgcttatttttttactcaaaaacatagttattaatattaggtaagatgtgatatgaaaat |
5958193 |
T |
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| Q |
301 |
gtgtttataagcgcgagacatcccttgttctagaagacagttttgttgggttaagttaggtacaacccaaattttaagattgtattagagtctattctag |
400 |
Q |
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| T |
5958194 |
gtgtttataagcgcgagacatcccttgttctagaagacagttttgttgggttaagttaggtacaacccaaaatttaagattgtattagagtctattctag |
5958293 |
T |
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| Q |
401 |
attcattgaggtatcggccactcaggtcacgctccaaatgtcctatcttctttgtgatggggtttgataggagtttcacattagatgagat |
491 |
Q |
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| T |
5958294 |
attcattgaggtatcggccactcaggtcacgctccaaatgtgctatcttctttgtgatggggtttgataggagtttcacattagatgagat |
5958384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 46676698 - 46676738
Alignment:
| Q |
340 |
gttttgttgggttaagttaggtacaacccaaattttaagat |
380 |
Q |
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| T |
46676698 |
gttttgtagggttgagttaggtccaacccaaattttaagat |
46676738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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