View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_2 (Length: 739)

Name: NF14349_low_2
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_2
NF14349_low_2
[»] chr3 (20 HSPs)
chr3 (20-725)||(27660731-27661433)
chr3 (596-725)||(27662364-27662492)
chr3 (596-696)||(26537591-26537690)
chr3 (610-719)||(1677172-1677280)
chr3 (605-710)||(3149448-3149554)
chr3 (645-725)||(26538717-26538797)
chr3 (587-694)||(27329021-27329127)
chr3 (610-719)||(13645239-13645349)
chr3 (596-684)||(3149811-3149900)
chr3 (611-719)||(13645043-13645150)
chr3 (624-720)||(27361399-27361494)
chr3 (613-672)||(3026678-3026737)
chr3 (613-672)||(39871942-39872001)
chr3 (604-725)||(1678517-1678638)
chr3 (602-695)||(39870636-39870728)
chr3 (615-686)||(34594455-34594525)
chr3 (613-695)||(25529691-25529773)
chr3 (451-504)||(3149329-3149382)
chr3 (618-695)||(32615395-32615472)
chr3 (620-725)||(55198061-55198166)
[»] chr7 (10 HSPs)
chr7 (599-722)||(19639727-19639848)
chr7 (602-718)||(38758077-38758193)
chr7 (606-696)||(5974339-5974428)
chr7 (610-719)||(5975416-5975524)
chr7 (602-713)||(38756847-38756960)
chr7 (616-721)||(41592952-41593056)
chr7 (613-725)||(37556275-37556387)
chr7 (611-694)||(30045978-30046061)
chr7 (654-713)||(20207936-20207994)
chr7 (603-637)||(19638722-19638756)
[»] chr1 (12 HSPs)
chr1 (564-723)||(9419547-9419705)
chr1 (602-718)||(13223100-13223215)
chr1 (596-713)||(13229033-13229152)
chr1 (586-721)||(27524465-27524599)
chr1 (586-695)||(28253388-28253497)
chr1 (599-695)||(12097714-12097809)
chr1 (613-725)||(32849672-32849784)
chr1 (596-713)||(40767802-40767921)
chr1 (613-725)||(11429430-11429542)
chr1 (609-695)||(37401220-37401306)
chr1 (610-719)||(43882243-43882351)
chr1 (610-725)||(43883546-43883661)
[»] chr2 (11 HSPs)
chr2 (535-725)||(31559282-31559471)
chr2 (596-713)||(44904709-44904830)
chr2 (602-718)||(28167084-28167202)
chr2 (611-713)||(28165852-28165956)
chr2 (619-716)||(44905931-44906028)
chr2 (615-719)||(5696131-5696234)
chr2 (665-725)||(30545995-30546054)
chr2 (639-725)||(30547791-30547876)
chr2 (451-513)||(28167260-28167322)
chr2 (597-722)||(9261649-9261773)
chr2 (616-721)||(40127441-40127545)
[»] chr8 (5 HSPs)
chr8 (551-713)||(44690181-44690341)
chr8 (610-719)||(7274413-7274521)
chr8 (587-684)||(27411005-27411101)
chr8 (604-725)||(7273094-7273215)
chr8 (608-720)||(37964378-37964488)
[»] chr5 (3 HSPs)
chr5 (602-720)||(33489658-33489775)
chr5 (551-601)||(28592239-28592289)
chr5 (384-433)||(33489910-33489959)
[»] chr4 (5 HSPs)
chr4 (602-718)||(11148533-11148648)
chr4 (596-713)||(34538307-34538426)
chr4 (602-718)||(34539558-34539674)
chr4 (610-719)||(20946050-20946158)
chr4 (615-719)||(2671736-2671839)
[»] chr6 (3 HSPs)
chr6 (596-722)||(1134325-1134449)
chr6 (616-723)||(28050086-28050193)
chr6 (616-721)||(19580098-19580203)
[»] scaffold0517 (1 HSPs)
scaffold0517 (609-695)||(6770-6856)


Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 20 - 725
Target Start/End: Original strand, 27660731 - 27661433
Alignment:
Q  20 tatgaaaacaacttaaa-tttatgaaaatatagtttaactttaaccatattttctcttcgattatcaagcttacaggattaatagcttattcaatgagtt 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27660731 tatgaaaacaacttaaaatttatgaaaatatagtttaactttaaccatattttctcttcgattatcaagcttacaggattaatagcttattcaatgagtt 27660830  T
Q  119 ttgtaattaagctatttaccaaacatatcctaattatggattttgatgtgattgagcagggtgaagtaagcagcaaaggttgtaacatatatctcaagag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27660831 ttgtaattaagctatttaccaaacatatcctaattatggattttgatgtgattgagcagggtgaagtaagcagcaaaggttgtaacatatatctcaagag 27660930  T
Q  219 caagactatttgttactagtagatagtgcccgaagattattctatgaagcacaagatatattatctttgctataaaaaataacgtgtgtttataccaaat 318  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||   |||||||||||||||    
T  27660931 caagactatttgttactagtagatagtgcctgaagattattctatgaagcataagaaatattatctttgctataaaaaataa--agtgtttataccaaat 27661028  T
Q  319 agagaaaataaaataaagtgtattgatcgtatgcaacgatctgccgaatttctgaaataatatataggcttaaataaataaaatatctctctaagttagc 418  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  27661029 agagaaaataaaataaagtgtactgatcgtatgtaacgatctgccgaatttctgaaataatatataggcttaaataagtaaaatatctctataagttagc 27661128  T
Q  419 gtgtttttcgttttaatcatgtatc-nnnnnnngttgcgaaacaacatttatatttacttaattttttgaaattgatctctgccgtcagttttcgtnnnn 517  Q
    |||||||||||||||||||||||||        ||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||        
T  27661129 gtgtttttcgttttaatcatgtatcttttttttgttgcgaaacaacctttgtatttacttaattttttgaaattggtctctgccgtcagttttcgt---a 27661225  T
Q  518 nnnnnnnnnnnnnttgttggctaacgaacgcaaacgtgacaattgatgagatggaaaaacacgcttatatggcctgacagatgacaactggtgttagtag 617  Q
                 |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||    
T  27661226 aaagaaaaagaaattgttgactaacgaacgcagacgtgacaattgatgagatggaaaaacacgcttatgtggcatgagagatgacaactggtgttagtag 27661325  T
Q  618 agggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttcttcc 717  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||     
T  27661326 agggactaaaacaaataacacatatttacataggggtgaaattaaagaaatgtaatcataaaattttgaaatttaaaactcaaaatttccaccttcttcg 27661425  T
Q  718 tctctctg 725  Q
    ||||||||    
T  27661426 tctctctg 27661433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 596 - 725
Target Start/End: Complemental strand, 27662492 - 27662364
Alignment:
Q  596 agatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaa 695  Q
    ||||| ||| |||| ||||||||||||||||||| |||||| |||||||||| |||   ||||||||| |||| |||| || ||||||||||||||||||    
T  27662492 agatggcaattggtcttagtagagggactaaaactaaaaacgcatatttacagaggac-gaaattaaaaaaacataattatcaaattttgaaatttaaaa 27662394  T
Q  696 ctcagtatttccaccttcttcctctctctg 725  Q
      |  |||||||||||||||||||||||||    
T  27662393 tcctttatttccaccttcttcctctctctg 27662364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 596 - 696
Target Start/End: Original strand, 26537591 - 26537690
Alignment:
Q  596 agatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaa 695  Q
    ||||||||| |||||||||||||||||||||||  ||||||||||||||| ||| || |||||||||| |||||||||||| |||||||  |||||||||    
T  26537591 agatgacaattggtgttagtagagggactaaaatcaaaaacacatatttaaataaggatgaaattaaa-aaacgtaatcatcaaattttacaatttaaaa 26537689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 610 - 719
Target Start/End: Original strand, 1677172 - 1677280
Alignment:
Q  610 gttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccac 709  Q
    |||| ||||||||||||||| |||||| || ||||||||||||  |||| |||| |||||||||||| ||| |||||| ||||||||  | |||||||||    
T  1677172 gttattagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaa-aaacgtaatcatcaaaatttgaattttaaaacatattatttccac 1677270  T
Q  710 cttcttcctc 719  Q
    ||||||||||    
T  1677271 cttcttcctc 1677280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 605 - 710
Target Start/End: Original strand, 3149448 - 3149554
Alignment:
Q  605 ctggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaatt-aaagaaacgtaatcataaaattttgaaatttaaaactcagtat 703  Q
    ||||| ||||||||||||||||||| ||| || ||| |||||||||||  |||||| ||| |||| ||||||| |||||||| ||||||||| ||| | |    
T  3149448 ctggtcttagtagagggactaaaaccaaagacgcatttttacatagggacgaaattaaaaaaaacataatcatcaaattttggaatttaaaattcattct 3149547  T
Q  704 ttccacc 710  Q
    |||||||    
T  3149548 ttccacc 3149554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 645 - 725
Target Start/End: Complemental strand, 26538797 - 26538717
Alignment:
Q  645 acataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttcttcctctctctg 725  Q
    ||||||||  ||||||||| |||| ||||||||||| |||||||||||||||  | | ||||||||||||||||| |||||    
T  26538797 acatagggacgaaattaaaaaaacttaatcataaaaatttgaaatttaaaacctattttttccaccttcttcctcactctg 26538717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 694
Target Start/End: Original strand, 27329021 - 27329127
Alignment:
Q  587 tggcctgacagatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttga 686  Q
    |||| ||| |||||| || | |||||| || | |||||||||| ||||||||| |||||||||||| |||||||||| |||| ||| ||| |||||||||    
T  27329021 tggcatgagagatgataagtagtgttaatacaaggactaaaaccaaaaacacaaatttacatagggatgaaattaaa-aaacctaaacatcaaattttga 27329119  T
Q  687 aatttaaa 694  Q
    | ||||||    
T  27329120 attttaaa 27329127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 719
Target Start/End: Complemental strand, 13645349 - 13645239
Alignment:
Q  610 gttagtagagggactaaaacaaaaaacacatatttacataggggtgaa-attaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttcca 708  Q
    ||||||||||||||||||||  ||||| || ||||||||||||  ||| |  ||| |||| ||||||| ||| |||||||||||||||  | | ||||||    
T  13645349 gttagtagagggactaaaacctaaaacgcaaatttacatagggaagaagaaaaaaaaaacataatcatcaaaatttgaaatttaaaacatattctttcca 13645250  T
Q  709 ccttcttcctc 719  Q
    |||||||||||    
T  13645249 ccttcttcctc 13645239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 596 - 684
Target Start/End: Complemental strand, 3149900 - 3149811
Alignment:
Q  596 agatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggg-gtgaaattaaagaaacgtaatcataaaatttt 684  Q
    |||||||| ||| | || |||||||||| ||||| |||||| ||| |||||||||||  |||||||||| |||||||||||| |||||||    
T  3149900 agatgacagctgctcttggtagagggacaaaaacgaaaaacgcatttttacatagggactgaaattaaaaaaacgtaatcatcaaatttt 3149811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 611 - 719
Target Start/End: Original strand, 13645043 - 13645150
Alignment:
Q  611 ttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccacc 710  Q
    ||||||||||||||||||| |||||| || ||||||||||||  |||| |||| |||| |||| || ||| |||||||| |||||   | | ||||||||    
T  13645043 ttagtagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaa-aaacataataatcaaaatttgaaatgtaaaatgtattctttccacc 13645141  T
Q  711 ttcttcctc 719  Q
    |||||||||    
T  13645142 ttcttcctc 13645150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 624 - 720
Target Start/End: Original strand, 27361399 - 27361494
Alignment:
Q  624 taaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttcttcctct 720  Q
    |||||| ||||||||| |||||||||||| |||||||||| |||| |||  || |||||||||| ||||||| |||   |||||| |||||||||||    
T  27361399 taaaaccaaaaacacaaatttacatagggatgaaattaaa-aaacctaaatatcaaattttgaattttaaaaatcaaattttccatcttcttcctct 27361494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 613 - 672
Target Start/End: Complemental strand, 3026737 - 3026678
Alignment:
Q  613 agtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaa 672  Q
    ||||||||||||||||| ||||||| || ||||||||||| || ||||||| ||||||||    
T  3026737 agtagagggactaaaaccaaaaacatatttttacatagggatgtaattaaaaaaacgtaa 3026678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 613 - 672
Target Start/End: Complemental strand, 39872001 - 39871942
Alignment:
Q  613 agtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaa 672  Q
    ||||||||||||||||| ||||||| || ||||||||||| || ||||||| ||||||||    
T  39872001 agtagagggactaaaaccaaaaacatatttttacatagggatgtaattaaaaaaacgtaa 39871942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 725
Target Start/End: Complemental strand, 1678638 - 1678517
Alignment:
Q  604 actggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtat 703  Q
    ||||| ||||||| |||||||||||| |||||  || ||| ||||||||   || ||||| |||||||||||| || |||| || |||||||  |||  |    
T  1678638 actggggttagtatagggactaaaaccaaaaaagcaaattaacatagggactaatttaaaaaaacgtaatcatcaatttttaaattttaaaaaccaggtt 1678539  T
Q  704 ttccaccttcttcctctctctg 725  Q
    ||||  ||||||||||||||||    
T  1678538 ttccttcttcttcctctctctg 1678517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 602 - 695
Target Start/End: Original strand, 39870636 - 39870728
Alignment:
Q  602 caactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaa 695  Q
    |||||||| | | ||||||||||||||  ||||||  || ||||||||||| || ||||||| |||||||||||| || ||||||| |||||||    
T  39870636 caactggtttaattagagggactaaaatcaaaaacgtatttttacatagggatgtaattaaa-aaacgtaatcatcaatttttgaattttaaaa 39870728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 686
Target Start/End: Original strand, 34594455 - 34594525
Alignment:
Q  615 tagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttga 686  Q
    ||||||||||||||| ||||||  | |||||||||||| |||||||||| |||| |||||||  ||||||||    
T  34594455 tagagggactaaaaccaaaaacggaaatttacatagggatgaaattaaa-aaacataatcattgaattttga 34594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 613 - 695
Target Start/End: Complemental strand, 25529773 - 25529691
Alignment:
Q  613 agtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaa 695  Q
    ||||||||||||||||| ||||||| || |||||| |||| || ||||||| ||| |||| ||| |  ||||||| |||||||    
T  25529773 agtagagggactaaaaccaaaaacatatttttacacagggatgtaattaaaaaaatgtaaacatcagtttttgaattttaaaa 25529691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 504
Target Start/End: Original strand, 3149329 - 3149382
Alignment:
Q  451 gttgcgaaacaacatttatatttacttaattttttgaaattgatctctgccgtc 504  Q
    |||||||||||||  || |||||||||||  ||||||||||| |||||||||||    
T  3149329 gttgcgaaacaacccttgtatttacttaaccttttgaaattggtctctgccgtc 3149382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 695
Target Start/End: Complemental strand, 32615472 - 32615395
Alignment:
Q  618 agggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaa 695  Q
    |||||| ||||| |||||| || |||| |||||||  |||||| || |||||||| ||  ||||||||||||||||||    
T  32615472 agggaccaaaaccaaaaacgcaaatttgcatagggacgaaattgaaaaaacgtaaacaccaaattttgaaatttaaaa 32615395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 620 - 725
Target Start/End: Complemental strand, 55198166 - 55198061
Alignment:
Q  620 ggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttcttcctc 719  Q
    |||||||||| |||||| ||  || ||||||||   || ||||| |||||||||||| || |||| || |||||||  |||| |||||  ||||||||||    
T  55198166 ggactaaaaccaaaaacgcaatttaacatagggactaatttaaaaaaacgtaatcatcaattttttaattttaaaaaccagtttttccttcttcttcctc 55198067  T
Q  720 tctctg 725  Q
    ||||||    
T  55198066 tctctg 55198061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 599 - 722
Target Start/End: Complemental strand, 19639848 - 19639727
Alignment:
Q  599 tgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactc 698  Q
    ||||||| | |||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||    
T  19639848 tgacaaccgttgttagtagagggattaaaacaaaaaacgcatgtttacatagggatgaaattaaa-aaacgtaatcatcaaattttgaaatttaaaactc 19639750  T
Q  699 agtatttccaccttcttcctctct 722  Q
    | | ||||||||||||| ||||||    
T  19639749 a-tttttccaccttctttctctct 19639727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 602 - 718
Target Start/End: Complemental strand, 38758193 - 38758077
Alignment:
Q  602 caactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagt 701  Q
    |||||||| ||||||||||||||||||| |||||||||| |||||||||||  ||||||||| |||| ||||||| |||||||| ||||||||| ||| |    
T  38758193 caactggtcttagtagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattcatt 38758094  T
Q  702 atttccaccttcttcct 718  Q
     ||||||||||||||||    
T  38758093 ctttccaccttcttcct 38758077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 606 - 696
Target Start/End: Original strand, 5974339 - 5974428
Alignment:
Q  606 tggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaac 696  Q
    |||||||||||||| |||||||| |||||||||| ||||||| |||| | |||||||| |||| ||||||| ||| |||||||||||||||    
T  5974339 tggtgttagtagagcgactaaaataaaaaacacaaatttacacagggataaaattaaa-aaacataatcatcaaagtttgaaatttaaaac 5974428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 610 - 719
Target Start/End: Complemental strand, 5975524 - 5975416
Alignment:
Q  610 gttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccac 709  Q
    ||||||||||||||||||||||||||  || ||||||||||||  ||||||||| |||| ||||||| ||| ||| |||||||||||  | | |||||||    
T  5975524 gttagtagagggactaaaacaaaaaatgcaaatttacatagggacgaaattaaa-aaacataatcatcaaaatttaaaatttaaaacatattctttccac 5975426  T
Q  710 cttcttcctc 719  Q
    ||| ||||||    
T  5975425 cttgttcctc 5975416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 602 - 713
Target Start/End: Original strand, 38756847 - 38756960
Alignment:
Q  602 caactggtgttagtagagggactaaaacaaaaaacacatatttacataggg-gtgaaattaaagaaacgtaatcat-aaaattttgaaatttaaaactca 699  Q
    |||||| | ||||||||||||||||||| |||||||||| |||||||||||  | |||||||| |||||||||||| ||| ||||||||||| |||  ||    
T  38756847 caactgctcttagtagagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaaatttttgaaattttaaatcca 38756946  T
Q  700 gtatttccaccttc 713  Q
     | |||||||||||    
T  38756947 atctttccaccttc 38756960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 616 - 721
Target Start/End: Complemental strand, 41593056 - 41592952
Alignment:
Q  616 agagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttctt 715  Q
    |||||||||||||| ||||||  | ||| |||||||| |||||||||| ||| |||| ||| |||||||||| ||||||| |||   |||||| ||||||    
T  41593056 agagggactaaaaccaaaaacgaaaattgacatagggatgaaattaaa-aaaagtaaacatcaaattttgaattttaaaaatcaaactttccatcttctt 41592958  T
Q  716 cctctc 721  Q
    ||||||    
T  41592957 cctctc 41592952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 725
Target Start/End: Complemental strand, 37556387 - 37556275
Alignment:
Q  613 agtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccacctt 712  Q
    ||||||||||||||||| ||||||  || |||||| |||| || ||||||| |||||||| ||| || ||||||| |||||||  || | || ||  |||    
T  37556387 agtagagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaacgtaaacatcaatttttgaattttaaaaaccacttttcccttctt 37556288  T
Q  713 cttcctctctctg 725  Q
    |||||||||||||    
T  37556287 cttcctctctctg 37556275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 611 - 694
Target Start/End: Original strand, 30045978 - 30046061
Alignment:
Q  611 ttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaa 694  Q
    ||||||||||||||||||| ||||||  || |||||||||||  ||||||||| |||  |||| || |||||||| ||||||||    
T  30045978 ttagtagagggactaaaaccaaaaacgtatttttacatagggacgaaattaaaaaaatataataatcaaattttggaatttaaa 30046061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 713
Target Start/End: Original strand, 20207936 - 20207994
Alignment:
Q  654 tgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttc 713  Q
    |||||||||| ||| ||||||||  ||||||||||||||||| ||| |||||||||||||    
T  20207936 tgaaattaaa-aaatgtaatcatctaattttgaaatttaaaaatcaatatttccaccttc 20207994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 603 - 637
Target Start/End: Original strand, 19638722 - 19638756
Alignment:
Q  603 aactggtgttagtagagggactaaaacaaaaaaca 637  Q
    ||||||| |||||||||||||||||||||||||||    
T  19638722 aactggtcttagtagagggactaaaacaaaaaaca 19638756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 564 - 723
Target Start/End: Complemental strand, 9419705 - 9419547
Alignment:
Q  564 tgagatggaaaaacacgcttatatggcctgacagatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaa 663  Q
    |||| ||| ||||||||||||| |||| ||| | |||| || || ||| | |||||||| |||||| ||||||  |||||||||||||| ||||||||||    
T  9419705 tgagttggcaaaacacgcttatgtggcatgaaatatgataagtgttgtgattagagggaataaaaccaaaaacgaatatttacatagggatgaaattaaa 9419606  T
Q  664 gaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttcttcctctctc 723  Q
     |||||||||||| ||||||||||||||||||  || | |||||||||||||| ||||||    
T  9419605 -aaacgtaatcatcaaattttgaaatttaaaaaccaatctttccaccttcttcatctctc 9419547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 602 - 718
Target Start/End: Original strand, 13223100 - 13223215
Alignment:
Q  602 caactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagt 701  Q
    ||||| |||||||||||||||||||||| |||||| ||| |||||||||||  ||||||||| |||| ||||||| |||||||| ||||||||| ||| |    
T  13223100 caactagtgttagtagagggactaaaaccaaaaacgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattcatt 13223199  T
Q  702 atttccaccttcttcct 718  Q
     |||||| |||||||||    
T  13223200 ctttcca-cttcttcct 13223215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 596 - 713
Target Start/End: Complemental strand, 13229152 - 13229033
Alignment:
Q  596 agatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggg-gtgaaattaaagaaacgtaatcat-aaaattttgaaatttaa 693  Q
    |||||||||||| | ||||||||||||||||||| |||||||||| |||||||||||  | |||||||| |||||||||||| ||  ||||||||||| |    
T  13229152 agatgacaactgctcttagtagagggactaaaacgaaaaacacatttttacatagggactaaaattaaaaaaacgtaatcatcaattttttgaaatttta 13229053  T
Q  694 aactcagtatttccaccttc 713  Q
    ||| || | |||||||||||    
T  13229052 aacccaatctttccaccttc 13229033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 586 - 721
Target Start/End: Original strand, 27524465 - 27524599
Alignment:
Q  586 atggcctgacagatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttg 685  Q
    ||||| ||| |||||| || | ||||||||| |||||||||||| ||||||||| |||||||||||| ||||||| || |||||||| ||| ||||||||    
T  27524465 atggcatgagagatgataagtagtgttagtacagggactaaaaccaaaaacacaaatttacatagggatgaaatttaa-aaacgtaaacatcaaattttg 27524563  T
Q  686 aaatttaaaactcagtatttccaccttcttcctctc 721  Q
    || |||||||  ||   |||||| ||||||||||||    
T  27524564 aattttaaaaaccaaactttccatcttcttcctctc 27524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 586 - 695
Target Start/End: Complemental strand, 28253497 - 28253388
Alignment:
Q  586 atggcctgacagatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttg 685  Q
    ||||| ||| |||||| || | |||||||||||||||||||||  ||||||  | |||||||||||| |||||||||| ||| |||| ||| ||||||||    
T  28253497 atggcatgagagatgataagtagtgttagtagagggactaaaatcaaaaacgtaaatttacatagggatgaaattaaaaaaaggtaaacatcaaattttg 28253398  T
Q  686 aaatttaaaa 695  Q
    || |||||||    
T  28253397 aattttaaaa 28253388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 599 - 695
Target Start/End: Complemental strand, 12097809 - 12097714
Alignment:
Q  599 tgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaa 695  Q
    ||||||||||| ||||||||||||||||||| |||||| ||| ||||  ||||| |||||||||| |||| |||| || || ||||||| |||||||    
T  12097809 tgacaactggtcttagtagagggactaaaaccaaaaacgcatttttaggtagggatgaaattaaa-aaacttaattatcaatttttgaattttaaaa 12097714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 613 - 725
Target Start/End: Complemental strand, 32849784 - 32849672
Alignment:
Q  613 agtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccacctt 712  Q
    ||||||||||||||||| ||||||  || |||||| |||| || ||||||| |||||||| ||| || ||||||| |||||||  || | |||||  |||    
T  32849784 agtagagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaacgtaaacatcaatttttgaattttaaaaaccactttttccttctt 32849685  T
Q  713 cttcctctctctg 725  Q
    |||||||||||||    
T  32849684 cttcctctctctg 32849672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 596 - 713
Target Start/End: Original strand, 40767802 - 40767921
Alignment:
Q  596 agatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacat-aggggtgaaattaaagaaacgtaatcat-aaaattttgaaatttaa 693  Q
    ||||| |||||| | ||||||||||||||||||| |||||| ||| ||||||| |||  ||||| |||| |||||||||||| ||| |||||||| || |    
T  40767802 agatggcaactgctcttagtagagggactaaaacgaaaaacgcatttttacataaggactgaaactaaaaaaacgtaatcatcaaatttttgaaaattta 40767901  T
Q  694 aactcagtatttccaccttc 713  Q
    ||| || | |||||||||||    
T  40767902 aacccaatttttccaccttc 40767921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 613 - 725
Target Start/End: Original strand, 11429430 - 11429542
Alignment:
Q  613 agtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccacctt 712  Q
    ||||||||||||||||| ||||||  || |||||| |||| || ||||||| ||| |||| ||| || ||||||| |||||||  || | |||||  |||    
T  11429430 agtagagggactaaaaccaaaaacgtatttttacacagggatgtaattaaaaaaatgtaaacatcaatttttgaattttaaaaaccactctttccttctt 11429529  T
Q  713 cttcctctctctg 725  Q
    |||||||||||||    
T  11429530 cttcctctctctg 11429542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 609 - 695
Target Start/End: Original strand, 37401220 - 37401306
Alignment:
Q  609 tgttagtagagggactaaaac-aaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaa 695  Q
    |||||||| |||||||||||| |||||||||| |||||||||||| |||| ||||| ||| |||| ||| |||||||||  |||||||    
T  37401220 tgttagtacagggactaaaaccaaaaaacacaaatttacatagggatgaagttaaa-aaaggtaaacatcaaattttgatttttaaaa 37401306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 610 - 719
Target Start/End: Original strand, 43882243 - 43882351
Alignment:
Q  610 gttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccac 709  Q
    |||| ||||||||||||||| ||||||  | |||||||||| |  | || |||| |||| ||||||| ||| |||||| ||||||||  | |||||||||    
T  43882243 gttattagagggactaaaaccaaaaacgaaaatttacatagagacggaaataaa-aaacataatcatcaaaatttgaattttaaaacatattatttccac 43882341  T
Q  710 cttcttcctc 719  Q
    ||||||||||    
T  43882342 cttcttcctc 43882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 610 - 725
Target Start/End: Complemental strand, 43883661 - 43883546
Alignment:
Q  610 gttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccac 709  Q
    ||||||| |||||||||||| |||||| ||  || ||||||||   || ||||| |||||||||||| || |||| || || ||||  |||| |||||      
T  43883661 gttagtacagggactaaaaccaaaaacgcaatttaacatagggactaatttaaaaaaacgtaatcatcaatttttaaatttaaaaaaccagtctttcctt 43883562  T
Q  710 cttcttcctctctctg 725  Q
    ||||||||||||||||    
T  43883561 cttcttcctctctctg 43883546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 535 - 725
Target Start/End: Complemental strand, 31559471 - 31559282
Alignment:
Q  535 tggctaacgaacgcaaacgtgacaattgatgagatggaaaaacacgcttatatggcctgacagatgacaactggtgttagtagagggactaaaacaaaaa 634  Q
    ||||||||| | ||| || || || |||||||| ||| |||||||| |||| |||| ||| |||||| || || ||| | || | |||||||||| ||||    
T  31559471 tggctaacggaggcacacatgtcacttgatgagttggcaaaacacgtttatgtggcatgagagatgataagtgttgtgattacaaggactaaaaccaaaa 31559372  T
Q  635 acacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttcttcctctctctg 725  Q
    ||  |||||||||||||| |||||||||| | ||||||||||  ||||||||||||||||| ||| |||||||||||||||| ||| ||||    
T  31559371 acgaatatttacatagggatgaaattaaa-acacgtaatcatcgaattttgaaatttaaaaatcaatatttccaccttcttcatctttctg 31559282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 596 - 713
Target Start/End: Original strand, 44904709 - 44904830
Alignment:
Q  596 agatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggg-gtgaaatt--aaagaaacgtaatcat-aaaattttgaaattt 691  Q
    |||||||||||| | ||||||||||||||||||  |||||||||| |||||||||||  |||||||  ||| |||||||||||| ||| |||||||||||    
T  44904709 agatgacaactgctcttagtagagggactaaaatgaaaaacacatttttacatagggactgaaattaaaaaaaaacgtaatcatcaaatttttgaaattt 44904808  T
Q  692 aaaactcagtatttccaccttc 713  Q
     |||| || | |||||||||||    
T  44904809 taaacccaatctttccaccttc 44904830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 602 - 718
Target Start/End: Complemental strand, 28167202 - 28167084
Alignment:
Q  602 caactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaatt--aaagaaacgtaatcataaaattttgaaatttaaaactca 699  Q
    |||||||| ||||||||||||||||||  |||||| ||| |||||||||||  ||||||  ||| |||| ||||||| |||||||| ||||||||| |||    
T  28167202 caactggtcttagtagagggactaaaatcaaaaacgcatttttacatagggacgaaattaaaaaaaaacataatcatcaaattttggaatttaaaattca 28167103  T
Q  700 gtatttccaccttcttcct 718  Q
     | |||||  |||||||||    
T  28167102 ttctttccggcttcttcct 28167084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 611 - 713
Target Start/End: Original strand, 28165852 - 28165956
Alignment:
Q  611 ttagtagagggactaaaacaaaaaacacatatttacat-aggggtgaaattaaagaaacgtaatcat-aaaattttgaaatttaaaactcagtatttcca 708  Q
    ||||||||||||||||||| |||| | ||| ||||||| |||  |||||||||| |||||||||||| ||| ||||||||||| |||| || | ||||||    
T  28165852 ttagtagagggactaaaacgaaaagcgcatttttacataaggactgaaattaaaaaaacgtaatcatcaaatttttgaaattttaaacccaatctttcca 28165951  T
Q  709 ccttc 713  Q
    |||||    
T  28165952 ccttc 28165956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 619 - 716
Target Start/End: Complemental strand, 44906028 - 44905931
Alignment:
Q  619 gggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttcttc 716  Q
    ||||||||||| |||||  ||| |||||||||||  ||||||||| |||| ||||||| |||||||| ||||||||| | | | ||||||| ||||||    
T  44906028 gggactaaaaccaaaaatgcatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaatttaaaattaattctttccactttcttc 44905931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 615 - 719
Target Start/End: Complemental strand, 5696234 - 5696131
Alignment:
Q  615 tagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttct 714  Q
    ||||||||||||||| ||||||  | ||||||| ||||  |||| |||| |||| ||||||| ||| |||||| ||||||||  | ||||||||||||||    
T  5696234 tagagggactaaaaccaaaaacgtaaatttacacagggacgaaaataaa-aaacataatcatcaaaatttgaattttaaaacatattatttccaccttct 5696136  T
Q  715 tcctc 719  Q
    |||||    
T  5696135 tcctc 5696131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 665 - 725
Target Start/End: Original strand, 30545995 - 30546054
Alignment:
Q  665 aaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttcttcctctctctg 725  Q
    |||| ||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||    
T  30545995 aaacataatcatcaaattttgaaatttaaaac-cattatttccaccttcttcctcactctg 30546054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 639 - 725
Target Start/End: Complemental strand, 30547876 - 30547791
Alignment:
Q  639 atatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttcttcctctctctg 725  Q
    ||||||||||| ||  ||||||||| |||| ||||||| ||||||| |||||||||||||| | ||||||| || |||||| |||||    
T  30547876 atatttacataaggacgaaattaaa-aaacataatcatcaaattttaaaatttaaaactcattctttccacatttttcctcactctg 30547791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 513
Target Start/End: Complemental strand, 28167322 - 28167260
Alignment:
Q  451 gttgcgaaacaacatttatatttacttaattttttgaaattgatctctgccgtcagttttcgt 513  Q
    |||||||||||||  || |||||||||||  ||||||||||| |||||||||||  |||||||    
T  28167322 gttgcgaaacaacccttgtatttacttaaccttttgaaattggtctctgccgtctattttcgt 28167260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 722
Target Start/End: Original strand, 9261649 - 9261773
Alignment:
Q  597 gatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaac 696  Q
    |||| |||||||| | |||||| |||||||||| ||||||  || |||||| | |  || ||||||| |||||||||||| || ||||| |||||||||     
T  9261649 gatgccaactggtataagtagacggactaaaaccaaaaacgtatttttacaaaagtatgtaattaaaaaaacgtaatcattaatttttg-aatttaaaaa 9261747  T
Q  697 tcagtatttccaccttcttcctctct 722  Q
     || | |||||  |||||||||||||    
T  9261748 ccactctttccttcttcttcctctct 9261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 616 - 721
Target Start/End: Original strand, 40127441 - 40127545
Alignment:
Q  616 agagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttctt 715  Q
    |||||||||||||| ||||||  | ||| |||||||| |||| ||||| ||| |||| ||| ||||||| || ||||||| |||   |||||| ||||||    
T  40127441 agagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaa-aaaagtaaacatcaaattttaaattttaaaaatcaaactttccatcttctt 40127539  T
Q  716 cctctc 721  Q
    ||||||    
T  40127540 cctctc 40127545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 551 - 713
Target Start/End: Original strand, 44690181 - 44690341
Alignment:
Q  551 acgtgacaattgatgagatggaaaaacacgcttatatggcctgacagatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacatag 650  Q
    ||||| || ||| |||| ||| |||||| |||||| |||| ||| |||||| || || ||||| | ||||||||||||| ||||||| |||||||||||     
T  44690181 acgtgtcacttgttgagttggcaaaacatgcttatgtggcatgagagatgataagtgatgttattcgagggactaaaaccaaaaacaaatatttacata- 44690279  T
Q  651 gggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttc 713  Q
    || |||||||||| ||||||||||||  |||||||||||||||||  || |||||||||||||    
T  44690280 ggatgaaattaaa-aaacgtaatcatcgaattttgaaatttaaaaaccaatatttccaccttc 44690341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 610 - 719
Target Start/End: Complemental strand, 7274521 - 7274413
Alignment:
Q  610 gttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccac 709  Q
    |||| ||||| ||||||||| |||||  || |||||||||||| ||||| |||| |||| ||||||| ||| |||||| ||||||||| | |||||||||    
T  7274521 gttattagagagactaaaaccaaaaatgcaaatttacatagggatgaaaataaa-aaacataatcatcaaaatttgaattttaaaacttattatttccac 7274423  T
Q  710 cttcttcctc 719  Q
    ||||||||||    
T  7274422 cttcttcctc 7274413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 684
Target Start/End: Complemental strand, 27411101 - 27411005
Alignment:
Q  587 tggcctgacagatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaatttt 684  Q
    |||| ||| |||||| || | |||||| || | |||||||||| ||||||||| |||||||||||| |||||||||| |||| ||| ||| |||||||    
T  27411101 tggcatgagagatgataagtagtgttaatacaaggactaaaactaaaaacacaaatttacatagggatgaaattaaa-aaacctaaacatcaaatttt 27411005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 725
Target Start/End: Original strand, 7273094 - 7273215
Alignment:
Q  604 actggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtat 703  Q
    ||||| |||| || |||||||||||| |||||  ||  || ||||||||   || ||||| |||||||||||| || |||| || |||||||  |||| |    
T  7273094 actggggttaatatagggactaaaaccaaaaatgcaatttaacatagggactaatttaaaaaaacgtaatcatcaatttttaaattttaaaaaccagtct 7273193  T
Q  704 ttccaccttcttcctctctctg 725  Q
    ||||  ||||||||||||||||    
T  7273194 ttccttcttcttcctctctctg 7273215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 720
Target Start/End: Complemental strand, 37964488 - 37964378
Alignment:
Q  608 gtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttcc 707  Q
    |||||| || |||||||||||| ||||||  | |||||||||||| ||||| |||  |||||||  ||| |||||||||| |||||||  ||   |||||    
T  37964488 gtgttaatacagggactaaaaccaaaaacgaaaatttacatagggatgaaaataa--aaacgtagacattaaattttgaattttaaaaaccaaactttcc 37964391  T
Q  708 accttcttcctct 720  Q
    | |||||||||||    
T  37964390 atcttcttcctct 37964378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 602 - 720
Target Start/End: Complemental strand, 33489775 - 33489658
Alignment:
Q  602 caactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagt 701  Q
    |||||||| |||||||||||||||| || |||||| ||| |||||||||||  | ||||||| |||| ||||||| |||||||||||||||||| ||| |    
T  33489775 caactggtcttagtagagggactaataccaaaaacgcatttttacatagggacggaattaaa-aaacataatcatcaaattttgaaatttaaaattcatt 33489677  T
Q  702 atttccaccttcttcctct 720  Q
     ||||||||||||||||||    
T  33489676 ctttccaccttcttcctct 33489658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 551 - 601
Target Start/End: Original strand, 28592239 - 28592289
Alignment:
Q  551 acgtgacaattgatgagatggaaaaacacgcttatatggcctgacagatga 601  Q
    ||||| |||||| ||| |||| ||||||||||||| |||||||||||||||    
T  28592239 acgtggcaattgctgacatggcaaaacacgcttatgtggcctgacagatga 28592289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 33489959 - 33489910
Alignment:
Q  384 aggcttaaataaataaaatatctctctaagttagcgtgtttttcgtttta 433  Q
    |||||||||||| |||||| || || |||||||||| |||||||||||||    
T  33489959 aggcttaaataagtaaaatgtccctgtaagttagcgcgtttttcgtttta 33489910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 602 - 718
Target Start/End: Original strand, 11148533 - 11148648
Alignment:
Q  602 caactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagt 701  Q
    |||||| | ||||||||||||||||||| |||||||||| |||||||||||  ||||||||| |||| ||||||| |||||||| ||||| ||| ||| |    
T  11148533 caactgatcttagtagagggactaaaaccaaaaacacatttttacatagggacgaaattaaaaaaacataatcatcaaattttggaattt-aaattcatt 11148631  T
Q  702 atttccaccttcttcct 718  Q
    ||||||||||| |||||    
T  11148632 atttccacctttttcct 11148648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 596 - 713
Target Start/End: Original strand, 34538307 - 34538426
Alignment:
Q  596 agatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggg-gtgaaattaaagaaacgtaatcat-aaaattttgaaatttaa 693  Q
    ||||| |||||| | ||||||||||||||||||| |||||| ||| |||||||||||  |||||||||| |||||||||||| ||| ||||||||||| |    
T  34538307 agatggcaactgctcttagtagagggactaaaacgaaaaacgcatttttacatagggactgaaattaaaaaaacgtaatcatcaaatttttgaaatttta 34538406  T
Q  694 aactcagtatttccaccttc 713  Q
    ||| || | |||||||||||    
T  34538407 aacccaatctttccaccttc 34538426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 602 - 718
Target Start/End: Complemental strand, 34539674 - 34539558
Alignment:
Q  602 caactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaatt-aaagaaacgtaatcataaaattttgaaatttaaaactcag 700  Q
    |||||||| |||||||||||||||||||||||||  ||| |||||||||||  |||||| ||| |||| ||||||| |||||||| ||||||||| |||     
T  34539674 caactggtcttagtagagggactaaaacaaaaaa-gcatttttacatagggacgaaattaaaaaaaacataatcatcaaattttggaatttaaaattcat 34539576  T
Q  701 tatttccaccttcttcct 718  Q
    | ||||| ||||||||||    
T  34539575 tctttcccccttcttcct 34539558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 610 - 719
Target Start/End: Original strand, 20946050 - 20946158
Alignment:
Q  610 gttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccac 709  Q
    |||| ||||||||||||||| ||||||||| ||||||| ||||  |||| |||| |||  ||||||| ||| |||||| ||||||||  | |||||||||    
T  20946050 gttattagagggactaaaaccaaaaacacaaatttacacagggacgaaaataaa-aaatataatcatcaaaatttgaattttaaaacatattatttccac 20946148  T
Q  710 cttcttcctc 719  Q
    ||||||||||    
T  20946149 cttcttcctc 20946158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 615 - 719
Target Start/End: Original strand, 2671736 - 2671839
Alignment:
Q  615 tagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttct 714  Q
    ||||||||||||||| |||||| || ||||||||||||  |||| |||| |||| ||||||| ||| |||||| ||||||||  | ||||| ||||||||    
T  2671736 tagagggactaaaaccaaaaacgcaaatttacatagggacgaaaataaa-aaacataatcatcaaaatttgaattttaaaacatattattttcaccttct 2671834  T
Q  715 tcctc 719  Q
    |||||    
T  2671835 tcctc 2671839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 596 - 722
Target Start/End: Original strand, 1134325 - 1134449
Alignment:
Q  596 agatgacaactggtgttagtagagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaa 695  Q
    |||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||   |||||| | |||| ||||||| || |||||||||||||||    
T  1134325 agatgacaactggacttagtagagggactaaatc-aaaaacgcatatttacatagggacaaaattaga-aaacataatcatcaatttttgaaatttaaaa 1134422  T
Q  696 ctcagtatttccaccttcttcctctct 722  Q
    |||| | |||| | ||||||| |||||    
T  1134423 ctcattctttctaacttcttcgtctct 1134449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 616 - 723
Target Start/End: Complemental strand, 28050193 - 28050086
Alignment:
Q  616 agagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttctt 715  Q
    ||||||||||||| ||||||| ||||||||| ||||| |||||||||| ||| |||| ||| ||| ||| ||||||||||  || | |||| | ||||||    
T  28050193 agagggactaaaataaaaaacgcatatttacgtagggatgaaattaaaaaaaagtaaacatcaaaatttaaaatttaaaaaccattgtttctatcttctt 28050094  T
Q  716 cctctctc 723  Q
    ||||||||    
T  28050093 cctctctc 28050086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 721
Target Start/End: Original strand, 19580098 - 19580203
Alignment:
Q  616 agagggactaaaacaaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaactcagtatttccaccttctt 715  Q
    |||||||||||||| ||||||  | ||| |||||||| |||| ||||| ||| |||| ||| ||||||| || ||||||| |||   |||||| ||||||    
T  19580098 agagggactaaaaccaaaaacgaaaattaacatagggatgaatttaaaaaaaagtaaacatcaaatttttaattttaaaaatcaaactttccatcttctt 19580197  T
Q  716 cctctc 721  Q
    ||||||    
T  19580198 cctctc 19580203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 609 - 695
Target Start/End: Complemental strand, 6856 - 6770
Alignment:
Q  609 tgttagtagagggactaaaac-aaaaaacacatatttacataggggtgaaattaaagaaacgtaatcataaaattttgaaatttaaaa 695  Q
    |||||||| |||||||||||| |||||||||| |||||||||||| |||| ||||| ||| |||| ||| |||||||||  |||||||    
T  6856 tgttagtacagggactaaaaccaaaaaacacaaatttacatagggatgaagttaaa-aaaggtaaacatcaaattttgatttttaaaa 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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