View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_low_21 (Length: 495)
Name: NF14349_low_21
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 42 - 479
Target Start/End: Original strand, 46472420 - 46472855
Alignment:
| Q |
42 |
ttacacgagtacgatttcgatttattgaccatgtgggaactaggattcaaatattacttgatatcagtttgatgaactcggcaactttggccttggactg |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46472420 |
ttacacgagtacgatttcgatttattgaccatgtgggaactaggattcaaatattacttgatatcagtttgatgaactcaacaactttggccttggactg |
46472519 |
T |
|
| Q |
142 |
tttaaatattactatgtaagaagtctcagacattttcaaatccataaagacattcaccttgcagtatggaaccaaatactatgcaacctttgtcttaaac |
241 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46472520 |
tttaaatattactttgtaag---tctcagacattttcaaattcctaaagacattcaccttgcagtatggaaccaaatactatgcaacctttgtcttaaac |
46472616 |
T |
|
| Q |
242 |
tttgctatttttcacttcacaaatctccgtatctttcaccttgtctctaatcctaacaagaccccttaatatctgttctaa-ttcaacaatcttataatt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46472617 |
tttgctatttttcacttcacaaatctccatagctttcaccttgtctctaatcctaacaagaccccttaatatctgttctaaattcaacaatcttataatt |
46472716 |
T |
|
| Q |
341 |
gatcttctcaaattgtaatttacctcgagatatttcataattaatttgacattctctgcctttggcactttccaattgctttggttctgagaccttgatt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46472717 |
gatcttctcaaattgtaatttacctcgagatatttcataattaatttgacattctctgcctttggcactttccaattgctttggttctgagaccttgatt |
46472816 |
T |
|
| Q |
441 |
gaacataatctttgatatcaaccccttcaataaaaattt |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46472817 |
gaacataatctttgatatcaaccccttcaataaaaattt |
46472855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 276 - 423
Target Start/End: Complemental strand, 35773603 - 35773456
Alignment:
| Q |
276 |
ttcaccttgtctctaatcctaacaagaccccttaatatctgttctaattcaacaatcttataattgatcttctcaaattgtaatttacctcgagatattt |
375 |
Q |
| |
|
||||||||| |||||| | ||||||||| ||||| | |||||||| |||||||||| | |||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
35773603 |
ttcaccttggctctaagctcaacaagaccacttaacttttgttctaactcaacaatctcagaattgatcttttcaaattgtattttacctcgagatattt |
35773504 |
T |
|
| Q |
376 |
cataattaatttgacattctctgcctttggcactttccaattgctttg |
423 |
Q |
| |
|
|| || ||||||| |||||||| |||||| ||||||||||| ||||| |
|
|
| T |
35773503 |
cagaaataatttgggattctctggctttggaactttccaatttctttg |
35773456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 423
Target Start/End: Complemental strand, 8957899 - 8957791
Alignment:
| Q |
315 |
tgttctaattcaacaatcttataattgatcttctcaaattgtaatttacctcgagatatttcataattaatttgacattctctgcctttggcactttcca |
414 |
Q |
| |
|
||||||||| |||||||| | |||||||||| |||| || || ||||| || ||||||||| |||||||||| | |||||| ||||| || |||||| |
|
|
| T |
8957899 |
tgttctaatccaacaatcgaaaaattgatcttttcaatttctattttacttcaagatatttccgaattaatttgtccttctcttactttgacaatttcca |
8957800 |
T |
|
| Q |
415 |
attgctttg |
423 |
Q |
| |
|
||||||||| |
|
|
| T |
8957799 |
attgctttg |
8957791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University