View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_24 (Length: 489)
Name: NF14349_low_24
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 6145078 - 6145551
Alignment:
| Q |
1 |
ttacgttttgtcaacttatactcttttcatgggcaccgcagtacaagattggtatgttactatgttagtacaaaaattaagagaatgtggtactttt-gc |
99 |
Q |
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| T |
6145078 |
ttacgttttgtcaacttatactattttcatgggcaccgcagtacaagattggtatgt----------------aaattaagagaatgtggtactttttgc |
6145161 |
T |
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| Q |
100 |
attgaaaatactcataattttcttgtgaaatattacatataatctttatagagataaatagaaaactcttgacttgaatcataagcaaccacaatattct |
199 |
Q |
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| T |
6145162 |
attgaaaatactcataattttcttgtgaaatattacatataatctttatagagataaatagaaaactcttgacttgaatcataagcaaccacaatattct |
6145261 |
T |
|
| Q |
200 |
atgattattcttcaaatcagttcaaagcaaagtaactaacacagaattaaaaaccaattttacacattatacaactttactacatgcaaacatatatagt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6145262 |
atgattattcttcaaatcagttcaaagcaaagtaactaacacacaattaaaaaccaaatttacatattatacaactttactacatgcaaacatatatagt |
6145361 |
T |
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| Q |
300 |
attccagccatcattagatgaaattttagaatttaatcaatgtaaaattaagaactaattcacaccattctccctgctccaccatcatcacactttccat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145362 |
attccagccatcattagatgaaattttagaatttaatcaatgtaaaattaagaactaattcacaccattctccctgctccaccatcatcacactttccat |
6145461 |
T |
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| Q |
400 |
cataacaatcagccacaacattattttgcacattcttataagtatacctttgagcaaagagcacaaacactaacacactcaatgaagtta |
489 |
Q |
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| T |
6145462 |
cataacaatcagccacaacattattttgcacattcttataagtatacctttgagcaaagagcacaaacacaaacacactcaatgtagtta |
6145551 |
T |
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