View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_25 (Length: 486)
Name: NF14349_low_25
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 2758277 - 2757813
Alignment:
| Q |
18 |
tcattaagagttttaaataaagttgaagtatcaatgtacaaacaagataagatgacatagttcactatgctattttaaattgagtttaatggctatgcat |
117 |
Q |
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| T |
2758277 |
tcattaagagttttaaa-aaagttgaagtatcaatgtacaaacaagataagatgacatagttcactatgctattttaaattgagtttaatggatatgcat |
2758179 |
T |
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| Q |
118 |
taacgcaataaaaatattttcaagagttttctaatcatatttaactttttaagtatatgctaagatattttaggatgtaatacaacaaagtagagttata |
217 |
Q |
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| T |
2758178 |
taacgcaataaaaatattttcaagagttttctaatcatatttaactttttaagtatatgctaagatattttaggatgtaatacaacaaagtagagttata |
2758079 |
T |
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| Q |
218 |
tggtcagatatggttagtgtc-gttgtcactgacatgaatcatatgccggccgttgtgtgtaaccgttac--nnnnnnnnnaacggcgtcaaattttgcg |
314 |
Q |
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| T |
2758078 |
tggtcagatatggttagtgtcggttgtcactgacataaatcatatgccggccgttgtctgtaaccgttactttttttttttaacggcgtcaaattttgcg |
2757979 |
T |
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| Q |
315 |
ccatttcttcaaccatcggaagttaggattgacgctggttacaaccagctctaaaaaccaaatttcctgccgctaattctcgcgtttgttgt-aaaaaat |
413 |
Q |
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| T |
2757978 |
ccatttcttcaaccatcggaagttaggattgacgctggttacaaccagctctaaaaaccaaatttcctgccgctaattctctcgtttgttgtaaaaaaat |
2757879 |
T |
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| Q |
414 |
gttgaacttgaatgaagaatatccaatgctaaaatccatttagttatattccttaggcctatgctt |
479 |
Q |
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| T |
2757878 |
gttgaacttgaatgaagaatatccaatgctaaaatccatatagttatattccttaggcctaggctt |
2757813 |
T |
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