View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_29 (Length: 466)
Name: NF14349_low_29
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 28216488 - 28216020
Alignment:
| Q |
1 |
gatatggaaattgaggatttgaagttagatactgcctttcgctataaagatggttttgataaggccatagaacaagttcatgtcctatttccatcgttcg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28216488 |
gatatggaaattgaggatttgaagttagatactgcctttcgctatcaagatggttttgataaggccatagaacaagttcatgtcctatttccatcgttgg |
28216389 |
T |
|
| Q |
101 |
atttgtcagaggctgatgctatgaagtccgtggttgatggaaaactagtattaagttttttccatttagtcccgaggctttttgatgttgtactactaac |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28216388 |
atttgtcagaggctgacgctatgaagtccgtggttgatggaaaactagta-taagttttttccatttagtctcgaggctttttgatgttgtactactaac |
28216290 |
T |
|
| Q |
201 |
attttgatgtagggaagtgctaggaacactctttttaatactctcttaaatactcacttttttatttggtaaaatcaatgttggtttttgacttttgaaa |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||| || |
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| T |
28216289 |
attttgatgtagggaagtgctgtgaacactttttttaatactctcttaaatactcacttttttatttggtgaaatcaatgttggtcttacac-tttggaa |
28216191 |
T |
|
| Q |
301 |
taggtctcacataaagtggtgggactcatggattccactcaataaataagtgttagagaa--cgttgaaaagaga--attgct----------------- |
379 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
28216190 |
taggtctcacatgaagtggtgggactcatggattccactcaataaataagtgttagagaaagcgttgaaaagagagtgttgctaacatatattttggaat |
28216091 |
T |
|
| Q |
380 |
--aacctatgctgacaaagttttgaatacctttacattttgatgttatgcgttttattatgctgccttttc |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
28216090 |
gtaacctatgctgacaaagttttgaatacctttacattttgatgttatacgttttattatactgccttttc |
28216020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 28232468 - 28232116
Alignment:
| Q |
1 |
gatatggaaattgaggatttgaagttagatactgcctttcgctataaagatggttttgataaggccatagaacaagttcatgtcctatttccatcgttcg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || | |
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| T |
28232468 |
gatatggaaattgaggatttgaaggtagacgctgccttgcgctatcaagatggttttgataaggccatagaacaagttcacatcctatttccatcatttg |
28232369 |
T |
|
| Q |
101 |
atttgtcagaggctgatgctatgaagtccgtggttgatggaaaactagtattaagttttttccatttagtcccgaggctttttgatgttgtactactaac |
200 |
Q |
| |
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|||| || |||||||| ||||||||||| ||||||||||||||||||||| |||| |||| |||||||||| ||| |||||| ||||| ||||||||||| |
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| T |
28232368 |
atttttcggaggctgacgctatgaagtctgtggttgatggaaaactagta-taag-ttttaccatttagtctcgaagcttttggatgtagtactactaac |
28232271 |
T |
|
| Q |
201 |
attttgatgtagggaagtgctaggaacactctttttaat-actctcttaaatactcacttttttatttggtaaaatcaatgttggtttttgacttttgaa |
299 |
Q |
| |
|
||||||| |||| ||||||| || |||| ||||||| | || ||||| || ||||||| ||||||| || ||||||||||||| | ||||| || |
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|
| T |
28232270 |
attttgacgtagagaagtgcaagaaacattcttttttttaacactctttaacactcactcttttattaggcgaaatcaatgttgg-cctacactttgaaa |
28232172 |
T |
|
| Q |
300 |
ataggtctcacataaagtggtgggactcatggattccactcaataaataagtgtta |
355 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |||||| ||||||| |
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|
| T |
28232171 |
ataggtctcacataaagtggtgagactcgtggattccaccgaataaacgagtgtta |
28232116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 28237360 - 28237201
Alignment:
| Q |
1 |
gatatggaaattgaggatttgaagttagatactgcctttcgctataaagatggttttgataaggccatagaacaagttcatgtcctatttccatcgttcg |
100 |
Q |
| |
|
||||||||||||||||| |||||| |||| |||| ||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||| | ||| | |
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| T |
28237360 |
gatatggaaattgaggagttgaagatagacgctgcatttcgctatcaaggtggttttgacaaggccatagaacaagttcacatcctatttccgttgtttg |
28237261 |
T |
|
| Q |
101 |
atttgtcagaggctgatgctatgaagtccgtggttgatggaaaactagtattaagtttttt |
161 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
28237260 |
atttgtcggaggctgacgctatgaagtctgtggttgatggaaaactagta-taagtttttt |
28237201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 28237120 - 28237058
Alignment:
| Q |
297 |
gaaataggtctcacataaagtggtgggactcatggattccactcaataaataagtgttagaga |
359 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||| |
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|
| T |
28237120 |
gaaacaggtctcacataaagtgttgggactcatagattccaccaaataaatgagtgttagaga |
28237058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 18716853 - 18716790
Alignment:
| Q |
291 |
acttttgaaataggtctcacataaagtggtgggactc--atggattccactcaataaataagtg |
352 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
18716853 |
actttagaaataggtcccacataaagtggtgagactcatatggattccacccaataaataagtg |
18716790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 437
Target Start/End: Complemental strand, 28237046 - 28237006
Alignment:
| Q |
397 |
ttttgaatacctttacattttgatgttatgcgttttattat |
437 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||| |
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| T |
28237046 |
ttttgaatacctttacatttcgatgttatgtgttttattat |
28237006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 445
Target Start/End: Complemental strand, 28232066 - 28231999
Alignment:
| Q |
379 |
taacctatgctgacaaag-ttttgaatacctttacattttgatgttatgcgttttattatgctgcctt |
445 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||| |||| |||| ||||||||||||||| ||||||| |
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|
| T |
28232066 |
taacctatgctgacaatgcttttaaatacctttgcattctgatcttatgcgttttattacactgcctt |
28231999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 17354563 - 17354636
Alignment:
| Q |
252 |
actcacttttttatttggtaaaatcaatgttggtttttgacttttgaaataggtctcacataaagtggtgggac |
325 |
Q |
| |
|
||||||||||||||| |||||||||||||| || | ||||| ||||||| | |||||||||||||||||| |
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|
| T |
17354563 |
actcacttttttattgggtaaaatcaatgtaggacctacactttggaaatagaacccacataaagtggtgggac |
17354636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 45909623 - 45909571
Alignment:
| Q |
229 |
ctctttttaatactctcttaaatactcacttttttatttggtaaaatcaatgt |
281 |
Q |
| |
|
||||||| |||||||||| || ||||||| ||||||| |||||||||||||| |
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|
| T |
45909623 |
ctcttttgaatactctctctaacactcactcttttattgggtaaaatcaatgt |
45909571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 325
Target Start/End: Original strand, 49738924 - 49739033
Alignment:
| Q |
216 |
agtgctaggaacactctttttaatactctcttaaatactcacttttttatttggtaaaatcaatgttggtttttgacttttgaaataggtctcacataaa |
315 |
Q |
| |
|
|||||||||||||||||||| || ||||| || ||||||| ||||||||||| ||||| |||| ||| | ||||| ||||| |||| ||||||| |
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|
| T |
49738924 |
agtgctaggaacactcttttcaactttctctctaacactcactcttttatttggtgaaatccatgtgggtcatacactttggaaattggtcccacataat |
49739023 |
T |
|
| Q |
316 |
gtggtgggac |
325 |
Q |
| |
|
|||||||||| |
|
|
| T |
49739024 |
gtggtgggac |
49739033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 34818366 - 34818301
Alignment:
| Q |
218 |
tgctaggaaca--ctctttttaatactctcttaaatactcacttttttatttggtaaaatcaatgt |
281 |
Q |
| |
|
||||||||||| ||||||| | ||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
34818366 |
tgctaggaacattctcttttgagcactctctctaacactcacttttttatttggtaaaatcaatgt |
34818301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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