View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_30 (Length: 458)
Name: NF14349_low_30
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_30 |
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| [»] scaffold0277 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 8e-99; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 26891817 - 26891631
Alignment:
| Q |
16 |
cagaaaagaggctaagaatgaagaaaactagaggatcaactattgcctcatgcgcatcgagcaatgggagcctgtagatcactggatttctaattttaaa |
115 |
Q |
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| T |
26891817 |
cagaaaagaggctaagaatgaagaaaactagaggatcaactattgcctcatgcgcatcgagcaatgggagcctgtagatcactggatttctaattttaaa |
26891718 |
T |
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| Q |
116 |
aatactcaaaaaccaaatgacaccatatttaacattaaaacctttctacgtccaataataccaaatgatataaacttttttatgttt |
202 |
Q |
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| T |
26891717 |
aatactcaaaaaccaaatgacaccatatttaacattaaaacctttctacgtccaataataacaaatgatataaacttttttatgttt |
26891631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 26809654 - 26809595
Alignment:
| Q |
197 |
atgtttgaataagaaaggttgagttgaaggcaacatcatgatggaggcagagactaggca |
256 |
Q |
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| T |
26809654 |
atgtttgaatacgaaaggttgagttgagagcagcatcataatggaggcagagactaggca |
26809595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 426
Target Start/End: Complemental strand, 28780876 - 28780837
Alignment:
| Q |
387 |
tttaccaagtgggaaacttccttcgcatttcctatcttct |
426 |
Q |
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| T |
28780876 |
tttaccaagtgggaaacttccttctcatttcctatcttct |
28780837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 26809775 - 26809733
Alignment:
| Q |
108 |
attttaaaaatactcaaaaaccaaatgacaccatatttaacat |
150 |
Q |
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| T |
26809775 |
attttaaaaatacacaaaaaccaaatgacactatatttaacat |
26809733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 26719596 - 26719542
Alignment:
| Q |
209 |
gaaaggttgagttgaaggcaacatcatgatggaggcagagactaggcatcaaaaa |
263 |
Q |
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| T |
26719596 |
gaaaggttgtgttgagggcagcaacataattgaggcagagactaggcatcaaaaa |
26719542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 5562 - 5606
Alignment:
| Q |
382 |
acacttttaccaagtgggaaacttccttcgcatttcctatcttct |
426 |
Q |
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| T |
5562 |
acacttttaccaagtgggaaacttccttctcatttcctatcttct |
5606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 426
Target Start/End: Original strand, 14082 - 14121
Alignment:
| Q |
387 |
tttaccaagtgggaaacttccttcgcatttcctatcttct |
426 |
Q |
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| T |
14082 |
tttaccaagtgggaaacttccttctcatttcctatcttct |
14121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 18683775 - 18683810
Alignment:
| Q |
382 |
acacttttaccaagtgggaaacttccttcgcatttc |
417 |
Q |
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| T |
18683775 |
acacttttaccaagtgggaaacttccttcccatttc |
18683810 |
T |
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