View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_low_33 (Length: 444)
Name: NF14349_low_33
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_33 |
 | |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 26890855 - 26891285
Alignment:
| Q |
1 |
acatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctctttctggtatgatgatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26890855 |
acatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctctttctggtatgataatg |
26890954 |
T |
|
| Q |
101 |
tgaatgaatgccttttcaccctggacacacgaggctcgactgtttggtgtcccaattcattgacatatatggtgggaagatgtttcaattgtaaggtttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26890955 |
tgaatgaatgccttttcaccctggacacaagaggctcgactgtttggtgtcccaattcattgacatatatggtgggaagatgtttcaattgtaaggtttt |
26891054 |
T |
|
| Q |
201 |
aggtgtaaatatcacaaatctagcagaatgtgctatatgtgcatgtaaatatgtattcgggaagagaaagaaatgcaaatatcataattgaatgtttatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26891055 |
aggtgtaaatatcacaaatctagcagaatgtgctatatgtgcatgtaaatatgtattcgggaagagaaagaaatgcaaatatcataattgaatgtttgtg |
26891154 |
T |
|
| Q |
301 |
ttaagaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgtnnnnnnnntctgtacaactaatcaaaac |
400 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26891155 |
ttaagaaaaatgctatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgtaaaaaaaatctgtacaactaatcaaaac |
26891254 |
T |
|
| Q |
401 |
ttccccaattcaaaaacctctcatcctgttt |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
26891255 |
ttccccaattcaaaaacctctcatcctgttt |
26891285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 27713839 - 27713769
Alignment:
| Q |
3 |
atgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca |
73 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
27713839 |
atgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca |
27713769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 27651898 - 27651844
Alignment:
| Q |
13 |
gattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagat |
67 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27651898 |
gattaatttgcttttacgaatacaagagtttgtacatattgcgatactgacagat |
27651844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 26641217 - 26641290
Alignment:
| Q |
10 |
tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc |
83 |
Q |
| |
|
||||||||| ||| ||||| || |||||| |||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
26641217 |
tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc |
26641290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 26747183 - 26747256
Alignment:
| Q |
10 |
tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc |
83 |
Q |
| |
|
||||||||| ||| ||||| || |||||| |||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
26747183 |
tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc |
26747256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 26828715 - 26828784
Alignment:
| Q |
10 |
tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaa |
79 |
Q |
| |
|
||||||||| |||| |||| || |||||| ||||||||||| ||||||| ||| |||| |||| |||||| |
|
|
| T |
26828715 |
tatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatagttcctcacaa |
26828784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 18105 - 18175
Alignment:
| Q |
3 |
atgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca |
73 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
18105 |
atgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca |
18175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 5078646 - 5078720
Alignment:
| Q |
143 |
tttggtgtcccaattcattgacatatatggtgggaagatgtttcaattgtaaggttttaggtgtaaatatcacaa |
217 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
5078646 |
tttggtgtcccaattcattgacttctatggtgggaagacatctcaattgtaagtttttaggtgtaaatatcacaa |
5078720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 18682787 - 18682705
Alignment:
| Q |
2 |
catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctct |
84 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||| |||||||||| | |||| || ||||||||| ||||||||||| |
|
|
| T |
18682787 |
catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccgatagatggttcgtcacaatctct |
18682705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 18650369 - 18650319
Alignment:
| Q |
2 |
catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatatt |
52 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
18650369 |
catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatatt |
18650319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 18718588 - 18718539
Alignment:
| Q |
2 |
catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatat |
51 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
18718588 |
catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatat |
18718539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 18692081 - 18692037
Alignment:
| Q |
36 |
aagagtttgtacatattgtgatactgacagatggttcatcacaat |
80 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
18692081 |
aagagtttgtacatattttcataccgacagatggttcatcacaat |
18692037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 417
Target Start/End: Original strand, 12072659 - 12072771
Alignment:
| Q |
304 |
agaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgtnnnnnnnntctgtacaactaatcaaaacttc |
403 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |||| |||| |||| |||| ||| |||| |
|
|
| T |
12072659 |
agaaaaatgctatttctcgcgacagtttccttcccgagagtgacccgaatgacatgtt-gattacgtgtaaaagacatctggacaaataataaaatcttc |
12072757 |
T |
|
| Q |
404 |
cccaattcaaaaac |
417 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12072758 |
cccaattcaaaaac |
12072771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 29269705 - 29269635
Alignment:
| Q |
3 |
atgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca |
73 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||| |||| |||||||||||| ||| |||| |||| |
|
|
| T |
29269705 |
atgtatgcatgattaatttgcttttaataatacaagagtatgtagatattgtgataccgactgatgtttca |
29269635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 946469 - 946412
Alignment:
| Q |
2 |
catgtatgtatgattaatttgcttttaagag-tacaagagtttgtacatattgtgata |
58 |
Q |
| |
|
||||||||| |||||| ||||||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
946469 |
catgtatgtgtgattagattgcttttaagagatgcaagagtttgtacatattttgata |
946412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University