View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_34 (Length: 439)
Name: NF14349_low_34
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 103 - 345
Target Start/End: Original strand, 7111119 - 7111369
Alignment:
| Q |
103 |
ttccacaatcagccacattatctgattaattcaaactaactctcgttgaaaataaattatactaactacaccaattatgttttgatttttgagtcaaatc |
202 |
Q |
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| T |
7111119 |
ttccacaatcggtcacattaccccattaattcaaactaactcttgttgaaactaagttatactaactacaccaattttgttttgatttttgagtcaaatc |
7111218 |
T |
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| Q |
203 |
aaattttttcctaacctcatctttcaggaattacatattactacatccact-------cagagttcaactatttcatcatatatctgatttctttcctca |
295 |
Q |
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| T |
7111219 |
aaacttttttcaaacctcatctttcaggcattacatattactgcgtccactttcttaattcacttcaactatttcatcaaatatattatttctttcttaa |
7111318 |
T |
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| Q |
296 |
tgttcttattcttcaactcatcattttatcttctcc-gaaggcatctacaa |
345 |
Q |
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| T |
7111319 |
tgttcttcttcttcaattcgtcattttcgcttctccataaggcatctacaa |
7111369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 3587275 - 3587436
Alignment:
| Q |
17 |
tacctttg-ttttttcttgtttatttaggtgctacagatccgtttgcaccagtttgtctaaaagaatactaacattgtccttgcctcttccacaatcagc |
115 |
Q |
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| T |
3587275 |
tacctttgcttttttatagtttatttaggtgttgcagatttgtctgcacccctttgtctaggcaaatacctacattgccctgacctcttccacaatcagc |
3587374 |
T |
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| Q |
116 |
cacattatctgattaattcaaactaactctcgttgaaaataaattatactaactacaccaat |
177 |
Q |
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| T |
3587375 |
cacattacctgattaattcaaaccaactctctttgaaactaagttatactaactacaccaat |
3587436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9995159 - 9995038
Alignment:
| Q |
1 |
tccctccactcttgtgtacctttgttttttcttgtttatttaggtgctacagatccgtttgcaccagtttgtctaaaagaatactaacattgtccttgcc |
100 |
Q |
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| T |
9995159 |
tccctccactcttgtgtacctttgttttttatagtttatttaggtgctgcagatccatttgcaccggtttgtctaaaagaatactgacgttgtccttgcc |
9995060 |
T |
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| Q |
101 |
tcttccacaatcagccacatta |
122 |
Q |
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| T |
9995059 |
tcttccacaatcagccacatta |
9995038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 259 - 345
Target Start/End: Complemental strand, 9995007 - 9994921
Alignment:
| Q |
259 |
ttcaactatttcatcatatatctgatttctttcctcatgttcttattcttcaactcatcattttatcttctccgaaggcatctacaa |
345 |
Q |
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| T |
9995007 |
ttcaactatttcatcatatatctgatttctttcctcatgttcttatttttcaactcatcattttatcttctccgaaggcatctacaa |
9994921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 9986280 - 9986126
Alignment:
| Q |
100 |
ctcttccacaatcagccacattatctgattaattcaaactaactctcgttgaaaataaattatactaactacaccaattatgttttgatttttgagtcaa |
199 |
Q |
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| T |
9986280 |
ctcttccacaatcggctacatttccccattaattcaaattaactctcgttgaaattaagttatactaactacagcaattatgtttt-aattttgtgtcaa |
9986182 |
T |
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| Q |
200 |
atcaa-attttttcctaacctcatctttcaggaattacatattactacatccactc |
254 |
Q |
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| T |
9986181 |
atcaattttttttccaaacctcatctttcaagcattacatattactacgtccactc |
9986126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 9997441 - 9997330
Alignment:
| Q |
100 |
ctcttccacaatcagccacattatctgattaattcaaactaactctcgttgaaaataaattatactaactacaccaattatgttttgatttttgagtcaa |
199 |
Q |
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||||| ||||||| ||||||||| | ||| ||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
9997441 |
ctctttcacaatcggccacattaccccatttattcaaactaactctcgttgaaattaagttatactaactacacaaattttgttttgattttcgagtcaa |
9997342 |
T |
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| Q |
200 |
atcaaatttttt |
211 |
Q |
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| T |
9997341 |
atcgattttttt |
9997330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 345
Target Start/End: Complemental strand, 10008253 - 10008167
Alignment:
| Q |
262 |
aactatttcatcatatatctgatttctttc---ctcatgttcttattcttcaactcatcattttatcttctccgaaggcatctacaa |
345 |
Q |
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| T |
10008253 |
aactatttcatcaaatatcttttttctttcttaatcttcttcttcttcttcaattcatcattttctcttctcctaaggcatctacaa |
10008167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 10008376 - 10008324
Alignment:
| Q |
147 |
gttgaaaataaattatactaactacaccaattatgttttgatttttgagtcaa |
199 |
Q |
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| T |
10008376 |
gttgaaactaagttatactaactacacaaattttgttttgattttcgagtcaa |
10008324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 10012086 - 10012041
Alignment:
| Q |
101 |
tcttccacaatcagccacattatctgattaattcaaactaactctc |
146 |
Q |
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| T |
10012086 |
tcttccacaatcggccacattaacccattaattcaaactaactctc |
10012041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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