View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_low_35 (Length: 435)
Name: NF14349_low_35
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 40055316 - 40055749
Alignment:
| Q |
1 |
taagggatctatgcaccagtacttgaaagaaatttaacagacaagtgtttaaaacgaaatagtcacgaagaatatataaggaaataatcattgtggtgtc |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||||||||||||| ||||| | |||||||||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
40055316 |
taagggagctatgcaccagtacatgaaataaatttaacagacaagtgcttaaatctaaatagtcaccaagaatatctaaggaaataatcattttggtgtc |
40055415 |
T |
|
| Q |
101 |
aaatgcagaagactaaaatgattcgacttagtgcttacactaatagtcagcctggttcaaattccggaattctacatctggtaggttacacgtaaatttc |
200 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40055416 |
aaatgcagttgacacaaatgattcgactttttgctcacacttattgtcagtctggttcaaattccggaattctacatctggtaggttacacgtaaatttc |
40055515 |
T |
|
| Q |
201 |
tttgtaaatcctactctgaccgagcatgagagtatgtctcctccactaatctaactttattttcac-----nnnnnnnnnnntcatattggcattttgtt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40055516 |
tttgtaaatcctactctgaccgagcatgagagtatgtctcctccactaatctaactttattttcacaaaaaaaaaaaaaaaatcatattggcattttgtt |
40055615 |
T |
|
| Q |
296 |
aatgctcattgagtctaatcaaactagtgccagtgattttcttagctcttctattagcacccaacgatttcctaatcttaactaaatcatcccattgctc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40055616 |
aatgctcattgagtctaatcaaactagtgccagtgattttcttagctcttctattagcacccaacgatttcctaatcttaactaaatcatcccattgctc |
40055715 |
T |
|
| Q |
396 |
tgtattagcataaatattagccatgacagaataa |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
40055716 |
tgtattagcataaatattagccatgacagaataa |
40055749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University