View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_36 (Length: 434)
Name: NF14349_low_36
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 13446396 - 13445966
Alignment:
| Q |
1 |
ctaaaacaacaatcggctgataagatataacaaacaaagacagagaaacacgacgtcacaaaacacacaaatggtaggagaaaaacagaaagaggcgcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13446396 |
ctaaaacaacaatcggctgataagatataacaaacaaagacagagaaacacgacgtcacaaaacacacaaatggtaggagaaaaacagaaggaggcgcga |
13446297 |
T |
|
| Q |
101 |
acactacctaaacgacaacaaaacacagctgaagcgccaagcagacagctacaaaccggacaccaacagaagtcggtaaatactcagctgacctgcgacc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
13446296 |
acacaacctaaacgacaacaaaacacagctgaagcgccaagcagacagctacaaaccggacaccaacagaagtcggtaaagactcagctgacctgtgacc |
13446197 |
T |
|
| Q |
201 |
ttgtaggccctaaatcacaatgtacaaataaatggaaggttgtttctgattgattcacacacaccgaatacaatcttcggtcatatcctgcaaaatgact |
300 |
Q |
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| T |
13446196 |
ttgtaggccctaaatcacaatgtagaaataaatggaaggttgtttctgattgattcac--acaccgaatacaatcttcggtcatatcctgcaaaatgact |
13446099 |
T |
|
| Q |
301 |
ccacaatgagctagagtacatctattttgaatcatgttattcaaaacctttgaaggcacctaccttttccaaatacgatgagacatctatatctctagac |
400 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
13446098 |
ccacgatgagctagagcacatctattttgaatcatgttattcaaaacctttgaaggcacctaccttttccaaatacgatgaaacatccatatctctagac |
13445999 |
T |
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| Q |
401 |
tacacatattgacttcaggtcagtatattcttg |
433 |
Q |
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||| ||||||||||||||||||||||||||||| |
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| T |
13445998 |
tacccatattgacttcaggtcagtatattcttg |
13445966 |
T |
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