View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_37 (Length: 429)

Name: NF14349_low_37
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_37
NF14349_low_37
[»] chr2 (5 HSPs)
chr2 (17-410)||(26211736-26212131)
chr2 (103-152)||(22010115-22010164)
chr2 (61-133)||(25078626-25078698)
chr2 (105-165)||(26059794-26059854)
chr2 (103-152)||(6300055-6300104)
[»] chr7 (2 HSPs)
chr7 (103-152)||(107499-107548)
chr7 (103-151)||(7797596-7797644)
[»] chr6 (4 HSPs)
chr6 (106-151)||(27870090-27870135)
chr6 (103-147)||(35235465-35235509)
chr6 (103-150)||(12885551-12885598)
chr6 (103-152)||(535838-535887)
[»] chr4 (5 HSPs)
chr4 (103-152)||(4124803-4124852)
chr4 (104-145)||(10983432-10983473)
chr4 (75-147)||(7937154-7937229)
chr4 (105-138)||(6731207-6731240)
chr4 (107-147)||(2803717-2803757)
[»] chr1 (6 HSPs)
chr1 (103-152)||(32854616-32854665)
chr1 (103-147)||(52922483-52922527)
chr1 (103-154)||(30202821-30202872)
chr1 (113-151)||(28542134-28542172)
chr1 (61-97)||(32854681-32854717)
chr1 (101-145)||(34142512-34142556)
[»] chr3 (2 HSPs)
chr3 (111-152)||(53525695-53525736)
chr3 (103-141)||(3876828-3876866)
[»] chr5 (2 HSPs)
chr5 (105-152)||(6668775-6668822)
chr5 (111-152)||(25021138-25021179)
[»] chr8 (1 HSPs)
chr8 (115-151)||(3185737-3185773)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 26212131 - 26211736
Alignment:
Q  17 aaggtgagtaaacaaaccactttggtatccagattatgaggcgatgtcattatactctttgaatgtatcaaagttgcaaatacatatcttttgtttgtaa 116  Q
    ||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26212131 aaggtgagtaaacaa-ccactttgatattcagattatgaggcgatgtcattatactctttgaatgtatcaaagttgcaaatacatatcttttgtttgtaa 26212033  T
Q  117 ttttatggactaaattgactaacaaaaaacacat--ttaagtaacaaaatatacatttgaggatcaaaaatgatt-ataaagcagcaattgaagatgttt 213  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26212032 ttttatggactaaattgactaacaaaaaacacatatttaagtaacaaaatatacatttgaggatcaaaaatgatttataaagcagcaattgaagatgttt 26211933  T
Q  214 cttcaattttgatggattcaaggacacattcacatgccaaagtggatgcttatacttctaattcacataccaaagtggatgcttacgcttccaaggtaga 313  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26211932 cttcaattttgatagattcaaggacacattcacataccaaagtggatgcttatacttctaattcacataccaaagtggatgcttacgcttccaaggtaga 26211833  T
Q  314 aaaccaggaacagaatggaagaaagaacctttggcaaacataaattcacattttctaagattctttagtaaggtaatgcatgtcttaaggtgtgtaa 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26211832 aaaccaggaacagaatggaagaaagaacctttggcaaacataaattcacattttctaagattctttagtaaggtaatgcatgtcttaaggtgtgtaa 26211736  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 22010115 - 22010164
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 152  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||||    
T  22010115 tcttttgttagtaattttatggacgaaattgacgaacaaaaaacacattt 22010164  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 25078626 - 25078698
Alignment:
Q  61 tgtcattatactctttgaatgtatcaaagttgcaaatacatatcttttgtttgtaattttatggactaaattg 133  Q
    |||||||||  ||| |||||||||| || ||| |||||||| ||||||||| | |||||||||||||| ||||    
T  25078626 tgtcattatggtctatgaatgtatcgaaattgtaaatacatctcttttgttagcaattttatggactatattg 25078698  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 26059854 - 26059794
Alignment:
Q  105 ttttgtttgtaattttatggactaaattgactaacaaaaaacacatttaagtaacaaaata 165  Q
    ||||||||||||||||||| | ||||||||||||  |||||||||||| || | |||||||    
T  26059854 ttttgtttgtaattttatgaattaaattgactaatgaaaaacacatttgaggatcaaaata 26059794  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 6300055 - 6300104
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 152  Q
    ||||||||||| ||||||||  | ||||||||||||| ||||||||||||    
T  6300055 tcttttgtttgaaattttatatattaaattgactaactaaaaacacattt 6300104  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 107499 - 107548
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 152  Q
    ||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  107499 tcttttgttagtaattttatggactaaaatgactaacaaaagacacattt 107548  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 7797644 - 7797596
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacatt 151  Q
    ||||||||| |||||||  |||||||||  |||||||||||||||||||    
T  7797644 tcttttgttagtaatttcttggactaaaccgactaacaaaaaacacatt 7797596  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 27870135 - 27870090
Alignment:
Q  106 tttgtttgtaattttatggactaaattgactaacaaaaaacacatt 151  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||    
T  27870135 tttgtttgtaatgttatggactaaattgcctaacaaaaaacacatt 27870090  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 35235465 - 35235509
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaaca 147  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||    
T  35235465 tcttttgtttgtagttttagggactaaattaactaacaaaaaaca 35235509  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 12885598 - 12885551
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacat 150  Q
    |||||||||||||||||||| ||  ||||| |||||||||||||||||    
T  12885598 tcttttgtttgtaattttatagatgaaatttactaacaaaaaacacat 12885551  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 535887 - 535838
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 152  Q
    ||||||||| ||||||||||||||| ||||||| |||  |||||||||||    
T  535887 tcttttgttagtaattttatggactgaattgaccaacggaaaacacattt 535838  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 4124852 - 4124803
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 152  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  4124852 tcttttgttagtaatttcatggactaaattgaccaacaaaaaacacattt 4124803  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 10983473 - 10983432
Alignment:
Q  104 cttttgtttgtaattttatggactaaattgactaacaaaaaa 145  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  10983473 cttttgtttgtaattttatggactaaaatgactaacaaaaaa 10983432  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 7937154 - 7937229
Alignment:
Q  75 ttgaatgtatcaaagttgcaaataca--tatcttttgttt-gtaattttatggactaaattgactaacaaaaaaca 147  Q
    |||||||||||||| |||||||||||  |||||||| ||| ||||||||||||| |||||||  |||| |||||||    
T  7937154 ttgaatgtatcaaaattgcaaatacaagtatctttttttttgtaattttatggattaaattggttaaccaaaaaca 7937229  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 6731207 - 6731240
Alignment:
Q  105 ttttgtttgtaattttatggactaaattgactaa 138  Q
    |||||| |||||||||||||||||||||||||||    
T  6731207 ttttgtgtgtaattttatggactaaattgactaa 6731240  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 2803717 - 2803757
Alignment:
Q  107 ttgtttgtaattttatggactaaattgactaacaaaaaaca 147  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  2803717 ttgttggtaattttatagactatattgactaacaaaaaaca 2803757  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 32854665 - 32854616
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 152  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  32854665 tcttttgtttgtaattctatgaactaaattgactagcaaaaaacacattt 32854616  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 52922483 - 52922527
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaaca 147  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||    
T  52922483 tcttttgtttgtagttttagggactaaattgactaacaaaaaaca 52922527  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 30202872 - 30202821
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaaaaaacacatttaa 154  Q
    ||||||||| ||||||||||| ||||||||||| ||  ||||||||||||||    
T  30202872 tcttttgttagtaattttatgaactaaattgacaaatgaaaaacacatttaa 30202821  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 28542172 - 28542134
Alignment:
Q  113 gtaattttatggactaaattgactaacaaaaaacacatt 151  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  28542172 gtaattttattgactaaattgactaaaaaaaaacacatt 28542134  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 32854717 - 32854681
Alignment:
Q  61 tgtcattatactctttgaatgtatcaaagttgcaaat 97  Q
    |||||||||| || |||||||||||||||||||||||    
T  32854717 tgtcattatagtccttgaatgtatcaaagttgcaaat 32854681  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 34142512 - 34142556
Alignment:
Q  101 tatcttttgtttgtaattttatggactaaattgactaacaaaaaa 145  Q
    |||||||||||  ||||||||||||||||||| || |||||||||    
T  34142512 tatcttttgttaataattttatggactaaattaaccaacaaaaaa 34142556  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 53525736 - 53525695
Alignment:
Q  111 ttgtaattttatggactaaattgactaacaaaaaacacattt 152  Q
    |||||||||||||||||||||||| |||| ||||||||||||    
T  53525736 ttgtaattttatggactaaattgaataacgaaaaacacattt 53525695  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 3876866 - 3876828
Alignment:
Q  103 tcttttgtttgtaattttatggactaaattgactaacaa 141  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  3876866 tcttttgtttgtaattttatggacgaaattgaccaacaa 3876828  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 6668775 - 6668822
Alignment:
Q  105 ttttgtttgtaattttatggactaaattgactaacaaaaaacacattt 152  Q
    ||||||| ||||||||||||| ||||||||| ||| ||||||||||||    
T  6668775 ttttgttagtaattttatggattaaattgacaaacgaaaaacacattt 6668822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 25021179 - 25021138
Alignment:
Q  111 ttgtaattttatggactaaattgactaacaaaaaacacattt 152  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||    
T  25021179 ttgtaatattatggactaaattgaccaacgaaaaacacattt 25021138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 3185773 - 3185737
Alignment:
Q  115 aattttatggactaaattgactaacaaaaaacacatt 151  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  3185773 aattttatggactaaattgacaaacgaaaaacacatt 3185737  T

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