View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_38 (Length: 427)
Name: NF14349_low_38
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 134 - 411
Target Start/End: Complemental strand, 379648 - 379371
Alignment:
| Q |
134 |
atccttatccatcgaaacatctaccacttgttgtgattcttcttcgtcagattccttatcatttccaacattctcaagcaatataagttagctttcaaat |
233 |
Q |
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| T |
379648 |
atccttatccatcgaaacatctaccacttgttgtgattcttcttcgtcagattccttatcatttccaacattctcaagcaatataagttagctttcaaat |
379549 |
T |
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| Q |
234 |
ccaattggtttcacaccaaaatgattcaatgcacgtttttaaggggattctacttattgttatatcaaattatatatctatataattaatcaacaagtta |
333 |
Q |
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| T |
379548 |
ccaattggtttcacaccaaaatgattcaatgcatgtttttaaggggattctacttattgttatatgaaataatatatctatataattaatcaacaagtta |
379449 |
T |
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| Q |
334 |
tcaaacttgagtataattaattttgtcacttttaataaaattattagtatattttttcactattcattatcttgtttc |
411 |
Q |
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| T |
379448 |
tcaaacttgagtataattaatttagtcacttttaataaaattattagtatattttttcactattcattatcttgtttc |
379371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 379815 - 379679
Alignment:
| Q |
1 |
agaatcaacactttgaacatcttcaaatccaactgtctggctattaggtttccgtttccgcttctttgatggactatttcttgtcaaatactggcactca |
100 |
Q |
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| T |
379815 |
agaatcaacactttgaacatcttcaaatccaactgtctggctattaggtttccgtttccgcttcttcgatggactatttcttgtcaaatactggcactca |
379716 |
T |
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| Q |
101 |
ggactatttcttcaacacagggaattccaccagatcc |
137 |
Q |
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| T |
379715 |
ggactatttcttcaacacagggaattccaccagatcc |
379679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 6298367 - 6298317
Alignment:
| Q |
134 |
atccttatccatcgaaacatctaccacttgttgtgattcttcttcgtcaga |
184 |
Q |
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| T |
6298367 |
atccttatccatcgaaacatctactacttgttgtgattcttcttcatcaga |
6298317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 6305177 - 6305127
Alignment:
| Q |
134 |
atccttatccatcgaaacatctaccacttgttgtgattcttcttcgtcaga |
184 |
Q |
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| T |
6305177 |
atccttatccatcgaaacatctactacttgttgtgattcttcttcatcaga |
6305127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6298733 - 6298680
Alignment:
| Q |
1 |
agaatcaacactttgaacatcttcaaatccaactgtctggctattaggtttccg |
54 |
Q |
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||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |
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| T |
6298733 |
agaatcaacaccttgaacatcttcaaatccaactgtctgactcttaggtttccg |
6298680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6305543 - 6305490
Alignment:
| Q |
1 |
agaatcaacactttgaacatcttcaaatccaactgtctggctattaggtttccg |
54 |
Q |
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||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |
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| T |
6305543 |
agaatcaacaccttgaacatcttcaaatccaactgtctgactcttaggtttccg |
6305490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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