View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_4 (Length: 626)
Name: NF14349_low_4
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Complemental strand, 49254891 - 49254431
Alignment:
| Q |
10 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaataca |
109 |
Q |
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| T |
49254891 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaataca |
49254792 |
T |
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| Q |
110 |
cgccatgttatgcttcttgaacca---ccctctgtgtctttctctaacaaacctttatccatattttctagcccagaaaattgaata------------- |
193 |
Q |
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| T |
49254791 |
ccccatgttatgcttcttgaaccagcaccctctctgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagtta |
49254692 |
T |
|
| Q |
194 |
cattaatattgggatttgaatacgttggtggaagttgagattattattgaaattggaataaacaatgttcagttcacatgtgatgctcgaacgaacnnnn |
293 |
Q |
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| T |
49254691 |
cattaatattgg-atttgaatacgttggtggaagttgagattattattgaaattggaataaacaatgttcagttcacatgtgatgctcgaacgaactttt |
49254593 |
T |
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| Q |
294 |
nnnaatgtaatagtttgctccgaacacggaatgaagagaaagcatcggctaatatacaaacatgacatgtggtacacagccttttctttttaagagaaga |
393 |
Q |
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| T |
49254592 |
tttaatgtaatagtttgctccgaacacggaatgaagagaaagcatcggctaatatacaaacatgacatgtggtacacagccttttctttttaagagaaga |
49254493 |
T |
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| Q |
394 |
acaacactgccttttcctatattattac-aaaatattataactccgtaccaagaccgaccct |
454 |
Q |
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| T |
49254492 |
acaacactgccttttcctatattattacaaaaatattataactccgtaccaagaccgaccct |
49254431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 49267149 - 49266985
Alignment:
| Q |
14 |
atcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgcc |
113 |
Q |
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|||||||||||||||||||||||||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
49267149 |
atcattgaaataatttgtagaaaatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacacccc |
49267050 |
T |
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| Q |
114 |
atgttatgcttcttgaaccaccctctgtgtctttctctaacaaacctttatccatattttctagc |
178 |
Q |
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| T |
49267049 |
atgttatgcttcttgaatcaccttctctgtctttctctaacaaacccttttccatattttctagc |
49266985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 49271559 - 49271447
Alignment:
| Q |
10 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaataca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| ||| |
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| T |
49271559 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacaca |
49271460 |
T |
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| Q |
110 |
cgccatgttatgc |
122 |
Q |
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| T |
49271459 |
ccccatgatatgc |
49271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 49274685 - 49274761
Alignment:
| Q |
10 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
49274685 |
catcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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