View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_43 (Length: 401)
Name: NF14349_low_43
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_43 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 96 - 401
Target Start/End: Complemental strand, 380396 - 380088
Alignment:
| Q |
96 |
gataaccataagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagc |
195 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||| |
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| T |
380396 |
gataaccatgagttaaatcatttgttgctaggaaagaaatacaaaaatgatgaccaaccttacctcttttagcatttgtgatcacgttcatcattgaagc |
380297 |
T |
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| Q |
196 |
ttcttccacgcttgctgccaaccgcatcaagttcatcaatgaatatgattgacggtgaaatttccttgctgtactgaacaggtctctgattctagctgca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
380296 |
ttcttccacgcttgctgccaaccgcatcaagttcatcaatgaatatgattgacggtgaaatttccttgctgtactgaacaggtctctgattctagctgca |
380197 |
T |
|
| Q |
296 |
cctcttccaacaaacaattctacaaactcgttagcag--actgtg-aaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgcca |
392 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
380196 |
cctcttccaacaaacaattctacaaactcgttagcagatactgtgaaaaaagggtacacctgctccccccgctactgcatgcgcaagtaatgtcttgcca |
380097 |
T |
|
| Q |
393 |
gttcctgga |
401 |
Q |
| |
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||||||||| |
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| T |
380096 |
gttcctgga |
380088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 6300454 - 6300070
Alignment:
| Q |
17 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcat |
116 |
Q |
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|||||||||||||||| ||| |||| | |||||| |||||| |||| |||||| | ||| ||||||| || |||||||||||| || |||| ||| | |
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| T |
6300454 |
atacacaccagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaa |
6300355 |
T |
|
| Q |
117 |
ttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagcttcttccacgcttgctgccaa |
216 |
Q |
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|||||||||| |||||||||||||| ||||||| || ||||||| ||||||||||| || ||||| |||||||||| |||||||||||||| |||| |
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| T |
6300354 |
ttgttgctagaaaagaaatacaaaa-tgatgactaaacttgcctgatttagcgtttgg--tcccgttcctcattgaagcctcttccacgcttgccaccaa |
6300258 |
T |
|
| Q |
217 |
ccgcatcaagttcatcaatgaatatgattgacggtg-aaatttccttgctgtactgaacaggtctctgattctagctgcacctcttccaacaaacaattc |
315 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6300257 |
ccgcatcaagttcatcaatgaatatgattgatggtgcaaatttccttgctctactgaacaggtctctgattctagctgcacctcttccaacaaacatttc |
6300158 |
T |
|
| Q |
316 |
tacaaactcgttagcag--actgtgaaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgccagttcctgga |
401 |
Q |
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||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6300157 |
tacaaactcactagcagatactgtgaaaaagggtacacctgcttcccccgctactgcacgtgcaagtaatgtcttgccagttcctgga |
6300070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 6307264 - 6306880
Alignment:
| Q |
17 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagttaaatcat |
116 |
Q |
| |
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|||||||||||||||| ||| |||| | |||||| |||||| |||| |||||| | ||| ||||||| || |||||||||||| || |||| ||| | |
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| T |
6307264 |
atacacaccagagattcatatcgattgagttcagtatagtatcgaataaagatacgactcgcatgcattatatgatattgataactatgagttcaataaa |
6307165 |
T |
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| Q |
117 |
ttgttgctaggaaagaaatacaaaaatgatgaccaagcttgcctcttttagcgtttgtgctcacgttcatcattgaagcttcttccacgcttgctgccaa |
216 |
Q |
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|||||||||| |||||||||||||| ||||||| || ||||||| ||||||||||| || ||||| |||||||||| |||||||||||||| |||| |
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| T |
6307164 |
ttgttgctagaaaagaaatacaaaa-tgatgactaaacttgcctgatttagcgtttgg--tcccgttcctcattgaagcctcttccacgcttgccaccaa |
6307068 |
T |
|
| Q |
217 |
ccgcatcaagttcatcaatgaatatgattgacggtg-aaatttccttgctgtactgaacaggtctctgattctagctgcacctcttccaacaaacaattc |
315 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6307067 |
ccgcatcaagttcatcaatgaatatgattgatggtgcaaatttccttgctctactgaacaggtctctgattctagctgcacctcttccaacaaacatttc |
6306968 |
T |
|
| Q |
316 |
tacaaactcgttagcag--actgtgaaaaagggtacacctgctccccccgctactgcacgcgcaagtaatgtcttgccagttcctgga |
401 |
Q |
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||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6306967 |
tacaaactcactagcagatactgtgaaaaagggtacacctgcttcccccgctactgcacgtgcaagtaatgtcttgccagttcctgga |
6306880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 382240 - 382140
Alignment:
| Q |
9 |
ccaagaatatacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccataagt |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
382240 |
ccaaaaatatacacaccagagatttgtattgatttaattcagtttagtatcgaatcaagatatgtctcacatgcatcttaagatattgataaccatgagt |
382141 |
T |
|
| Q |
109 |
t |
109 |
Q |
| |
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| |
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| T |
382140 |
t |
382140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 30863989 - 30864065
Alignment:
| Q |
17 |
atacacaccagagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagata |
93 |
Q |
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|||||||| |||||||||||| |||| | |||| |||||||| ||||| ||||| | |||||||| ||| ||||||| |
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| T |
30863989 |
atacacactagagatttgtatcgattgagttcattttagtattgaatcgagatacgactcacatgtatcgtaagata |
30864065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 30035413 - 30035336
Alignment:
| Q |
27 |
gagatttgtattgatttaattcagtttagtatggaatcaagatatgtctcacatgcatcttaagatattgataaccat |
104 |
Q |
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||||||||||| |||| |||||| || ||||| |||| ||||| | |||||||| ||| ||||||| |||||||||| |
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| T |
30035413 |
gagatttgtatcgattgaattcaattaagtattgaattgagatacgactcacatgtatcataagatactgataaccat |
30035336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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