View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_44 (Length: 400)
Name: NF14349_low_44
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 4377954 - 4377580
Alignment:
| Q |
19 |
attcaggaacaaatcatgcatgat---------ttgctgcaagtgcaacaaactttagatctgttagatgtgaatgcatataatagcatgctgttacttt |
109 |
Q |
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| T |
4377954 |
attcaggaacaaatcatgcatgatcctctatagttgctgcaagtgcaacaaaatttagatctgttagatgtgaatgcatataatagcatgctgttacttt |
4377855 |
T |
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| Q |
110 |
agatctgttgcatttatttattcacacaattatatggcgaaattttctgctaggaatcaaagtttagaatcaacgaagtttatagcataaagtgttatat |
209 |
Q |
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| T |
4377854 |
agatctgttgcatttatttattcacacaattatatggcgaaattttctgctaggaatcaaagtttagaatcaacgaagtttatagcataaagtgttatat |
4377755 |
T |
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| Q |
210 |
attatagtacatcttacaatcacctacctagctcacaaaataacaaatcaataacataagtaactaccgcaactaagattcgatgagactaaatctcaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4377754 |
attatagtacatcttacaatcacctacctagctcacaaaataacaaatcaataacataagtaactaccgcaactaagattcgatgagactaaatctcaaa |
4377655 |
T |
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| Q |
310 |
tcttaattacaaagcccaataggcctaaccgatatatcaccatttaattacataatgttattttcttatgtgatt |
384 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4377654 |
tcttaattacaaagcccaacaggcctaaccgatatatcaccatttaattacataatgttattttcttatgtgatt |
4377580 |
T |
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