View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_49 (Length: 382)
Name: NF14349_low_49
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 126 - 366
Target Start/End: Original strand, 34001432 - 34001679
Alignment:
| Q |
126 |
gctaatttccaacacaaaattgctattttcagcgtgagttaactcacg-----ctattttgttgggaatgaacnnnnnnn--tattgtgagaagagtcgt |
218 |
Q |
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| T |
34001432 |
gctaatttccaacacaaaattgctattctcagcgtgaggtaactcacgttacactattttgttaggaatgaacaaaaaaaaatattgtgagaagagtcgt |
34001531 |
T |
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| Q |
219 |
accctttcctcattggttcaatttgnnnnnnnaagagagtccaaggttacgtgagatgactcatcacgtgctagctatggagtgtgggtcattacacaaa |
318 |
Q |
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| T |
34001532 |
accctttcctcattggttcaatttgtttttttaagagagtcgaaggttacgtgagatgactcatcacgtgctagctatggagtgtgggtcattacacaaa |
34001631 |
T |
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| Q |
319 |
ttatatgactgaaacaacacttactatgcctatatatatgacaaataa |
366 |
Q |
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| T |
34001632 |
ttatatgactgaaacaacacttactatgcctatatatctgacaaataa |
34001679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 34001330 - 34001371
Alignment:
| Q |
24 |
ttcattggtacaatttgtatttttagagagtccaattgtgtg |
65 |
Q |
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| T |
34001330 |
ttcattggtacagtttgtatttttagagagtccaattgtgtg |
34001371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 34005005 - 34005065
Alignment:
| Q |
254 |
agagtccaaggttacgtgagatgactcatcacgtgctagctatggagtgtgggtcattaca |
314 |
Q |
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| T |
34005005 |
agagtccacggttaggtgagatgaatcagcacgtgctagctatgaaatgtgggtcattaca |
34005065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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