View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_5 (Length: 626)
Name: NF14349_low_5
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 9e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 234 - 498
Target Start/End: Complemental strand, 13013680 - 13013417
Alignment:
| Q |
234 |
aaaatatctccacatttgtttttaaagaagcaagatgaaatatattaataaatggtgagaaccattcaacgtatatatgcgtctaaatcgaactgaacaa |
333 |
Q |
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| T |
13013680 |
aaaatatctccacatttgtttttaaaaaagccagatgaaatatattaataaatggtgagaactattcaacatgtct----gtctaaatcgaactgaacaa |
13013585 |
T |
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| Q |
334 |
aatcgaagttgatacaatcaccat---aacaataattaaatcttatcccattaaataaagtcaactatatgaataaaattatgtaataatcttcttcaat |
430 |
Q |
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| T |
13013584 |
agtcgaagttcatacaatcaccattacaacaataattaaatcttattccattaaataaagtcaactatatgaataaaattacgcaataatcttcttcaat |
13013485 |
T |
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| Q |
431 |
gattaagatgtattaactataagtacagcannnnnnnnngagaggataagtacagcatacttggctac |
498 |
Q |
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| T |
13013484 |
gattaagatgtattaactataagtacatcatttttttttgagaggataagtacaacatacttggctac |
13013417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 492 - 614
Target Start/End: Complemental strand, 13013032 - 13012910
Alignment:
| Q |
492 |
tggctactacataatcctaattattgagctggatagatgtcaatgttggtttctgtctaaaaactatgaatattttgatgtattcttcaaaaaaccattt |
591 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13013032 |
tggctaccacataatcctaattattgagctggatagatgtcaatgttggtttccggctaaaaactatgaatattttgatgtattcttcaaaaaaacattt |
13012933 |
T |
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| Q |
592 |
gatgtgaaacacttgatgatatt |
614 |
Q |
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| T |
13012932 |
gatgtgaaacacttgatgatatt |
13012910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 492 - 614
Target Start/End: Complemental strand, 13084420 - 13084298
Alignment:
| Q |
492 |
tggctactacataatcctaattattgagctggatagatgtcaatgttggtttctgtctaaaaactatgaatattttgatgtattcttcaaaaaaccattt |
591 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13084420 |
tggctaccacataatcctaattattgagctggatagatgtcaatgttggtttccggctaaaaactatgaatattttgatgtattcttcaaaaaaacattt |
13084321 |
T |
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| Q |
592 |
gatgtgaaacacttgatgatatt |
614 |
Q |
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| T |
13084320 |
gatgtgaaacacttgatgatatt |
13084298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 13084836 - 13084767
Alignment:
| Q |
234 |
aaaatatctccacatttgtttttaaagaagcaagatgaaatatattaataaatggtgagaaccattcaac |
303 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
13084836 |
aaaatatctccacatttgtttttaaaaaagccagatgaaatatattaataaatggtgagaactattcaac |
13084767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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