View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_51 (Length: 375)
Name: NF14349_low_51
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 4710808 - 4711160
Alignment:
| Q |
1 |
ttgagattaatttcaagattgaatgtggctgctaatctgcagcttgtgtcttaaggctactgaaaacgagtcaacacattatgtttgaatgtgggtatgc |
100 |
Q |
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| T |
4710808 |
ttgagattaatttcaagattgaatgtggctgctaatctgcagcttgtgtcttaaggctactgaaaacgagtcaacacattatgtttgaatgtgggtatgc |
4710907 |
T |
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| Q |
101 |
tagatctatttggaattggtttgctaaatcattatgaccatttcaaagtagtctatttcatgacaagtctctagtgttgtttcacacaaatttcccttct |
200 |
Q |
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| T |
4710908 |
tagatctatttggaattggtttgctaaatcattatgaccatttcaaagtagtctatttcatgacaagtctctagtgttgtttcacacaaatttcccttct |
4711007 |
T |
|
| Q |
201 |
acttcttaatgtaatgtatatataacaataaataagtgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattct |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4711008 |
acttcttaatgtaatgtatatataacaataaataaatgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctatttt |
4711107 |
T |
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| Q |
301 |
cacacaacacaactatggcaaaatccataaacgaaaaatttcacactaaaattaccct |
358 |
Q |
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| T |
4711108 |
c-----acataactatggcaaactccataaacgaaaaatttcacactaaaattaccct |
4711160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 133 - 358
Target Start/End: Original strand, 4844863 - 4845088
Alignment:
| Q |
133 |
tatgaccatttcaaagtagtctatttcatgacaagtctctagtgttgttt-cacacaaatttcccttctacttcttaatgtaatgtatatataacaataa |
231 |
Q |
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| T |
4844863 |
tatgaccatttcaaagtagtctatttcatgacaaag-tctagtgttgttttcacacaaatttcccttctacttctcaatctaatgtatatataacaataa |
4844961 |
T |
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| Q |
232 |
ataagtgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattctcacacaacacaactatggcaaaatccataaa |
331 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
4844962 |
ataagtgcaacttcaagcatcctaacaatcaacaagaaaaacaaaatctagtcttcttcactctattctcacacaacacaactatgccaaactccataaa |
4845061 |
T |
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| Q |
332 |
cgaaaaatttcacactaaaattaccct |
358 |
Q |
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| T |
4845062 |
caaaaaatttcacactaaaatcaccct |
4845088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 4696210 - 4696251
Alignment:
| Q |
311 |
aactatggcaaaatccataaacgaaaaatttcacactaaaat |
352 |
Q |
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| T |
4696210 |
aactatggcaaactccagaaacaaaaaatttcacactaaaat |
4696251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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