View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_57 (Length: 369)
Name: NF14349_low_57
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 38 - 363
Target Start/End: Original strand, 42618172 - 42618508
Alignment:
| Q |
38 |
ttaaaactacaaaaacaacaacaactaagtcttattcaactacattttgtcnnnnnnnn-gtcttattcagctatatattgattaagcaacgtcataatg |
136 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||| |||||| ||||||||||||||||| |
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| T |
42618172 |
ttaaaactacaaaaacaagaacaactaagtcttattcaactacattttgtcaaaaaaaaagtcttgtttagctatttattgactaagcaacgtcataatg |
42618271 |
T |
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| Q |
137 |
ttctatcatatccttctattttggactatggatctaaattattt---------ggnnnnnnnnnntcttgtagtatatgatctcc-aactttcacctcta |
226 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
42618272 |
ttctatcatatccttctattttggactatggatccaaattatttaaaaataaaaaaataaaaaaatcttgtagtatatgatctccaaactttcacctcta |
42618371 |
T |
|
| Q |
227 |
agttgaaatacttcgnnnnnnnnnngctgaaattacaccagtcgaatatatatgtcttcttcgaat--nnnnnnnnnctatcctaacatcnnnnnnnatc |
324 |
Q |
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||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
42618372 |
agttgaaatgcttcg--ttttttttgctgaaattacaccagtcgaatatatatgtcttcttcgaataaaaaaaaagactatcctaacatctttttttatc |
42618469 |
T |
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| Q |
325 |
taggactttacacaaaatccttctgcatcatatatatat |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
42618470 |
taggactttacacaaaatccttctgcatcatatatatat |
42618508 |
T |
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