View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_59 (Length: 366)
Name: NF14349_low_59
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_59 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 6 - 366
Target Start/End: Complemental strand, 4785614 - 4785266
Alignment:
| Q |
6 |
cagagacaatgaggatgttgaagattaaaggtctgtgctatatttgtgctacatagaataagaaaacatactattgagaaagnnnnnnnnnnntcatatt |
105 |
Q |
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| T |
4785614 |
cagagacaatgaggatgttgtagattaaaggtctgtgctatatttgtgctacatagaataagaaaacatactattgagaaagaaaaaaaa---tcatatt |
4785518 |
T |
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| Q |
106 |
ttgtgtgaccgtgttaacaaggagaagctgcatatggtgcattgcaagacaaaggttcaaatggcaaatgtgctgactaaaccaaaccattgagtaaggg |
205 |
Q |
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| T |
4785517 |
ttgtgtgaccgtgttaacaaggagaagctgcat---------tgcaagacaaaggttcaaatggcaaatgtgctgactaaaccaaaccattgagtaaggg |
4785427 |
T |
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| Q |
206 |
caggtttgaagggctcaattaaagaaatgcttggagtggagtcactagccaaagtcaatcaaggaggtgtgtatgtgtagttaagttagttagaatctaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4785426 |
caggtttgaagggctcaattaaagaaatgcttggagtggagtcactagccaaagtcaatcaaggaggtgtgtatgtgtagttaagttagttagaatctaa |
4785327 |
T |
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| Q |
306 |
catacgtcacttggttggcatatcacccctcaaccttgtggtttttggtttgaaactagcc |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4785326 |
catacgtcacttggttggcatatcacccctcaaccttgtggtttttggtttgaaactagcc |
4785266 |
T |
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