View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_60 (Length: 365)
Name: NF14349_low_60
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_60 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 16845190 - 16845005
Alignment:
| Q |
5 |
gtttaaagtcgaaacgttatgaagtggatctgcagactggtgtggaagataggttcagctggatatacacgaacaatgttgcgttttttgcagagaaaga |
104 |
Q |
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| T |
16845190 |
gtttaaagtcgaaactttatggcgcggatctgcagactggtgtggaagataggttcagctggatatacacggacaatgttgcgttttttgcagagaaaga |
16845091 |
T |
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| Q |
105 |
atcatttgattttataaatttatatgctttttcttgataatgatgctgctatagaatctaatttgtatatgcattcactgtgtcac |
190 |
Q |
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| T |
16845090 |
atcatttgattatataaatttatatgctttttcttgataatgatgctgctatagaatctaatttgtatatgcattcactgtgtcac |
16845005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 216 - 342
Target Start/End: Complemental strand, 16845006 - 16844880
Alignment:
| Q |
216 |
acttcttactttatttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaaagacatca |
315 |
Q |
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| T |
16845006 |
acttcttactttatttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttgaaagacatca |
16844907 |
T |
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| Q |
316 |
aggttattgatagtacatggcaggacg |
342 |
Q |
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| T |
16844906 |
aggttattgatagtacatggcaggacg |
16844880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 16838922 - 16838835
Alignment:
| Q |
248 |
ttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaaagacatcaaggttattgatagtacatgg |
335 |
Q |
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| T |
16838922 |
ttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaaagatatcaaggttattgatcgtacatgg |
16838835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 18328346 - 18328439
Alignment:
| Q |
232 |
agttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaaagacatcaaggttattga |
325 |
Q |
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| T |
18328346 |
agttgtgttttacaacttcactttccaatctaacacaagtcctttttgaattgtagaactgcaatcctaacttcaaagatatcaacgttattga |
18328439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 18323987 - 18324114
Alignment:
| Q |
208 |
attatgcaacttcttactttatttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaa |
307 |
Q |
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|||| |||||||||| ||| ||| ||||||||||| | | ||||||||||||||||||||||||| ||||| |||| |||| || ||||| |||||||| |
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| T |
18323987 |
attaagcaacttcttgctt-attcagttgtgttttgcaacttcactttccaatctaacacaagtcttttttgaattgtagaacttcaatcctaacttcaa |
18324085 |
T |
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| Q |
308 |
agacatcaaggttattgatagtacatggc |
336 |
Q |
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| T |
18324086 |
agatatcaacattattgacggtacatggc |
18324114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 333
Target Start/End: Original strand, 22040779 - 22040884
Alignment:
| Q |
228 |
atttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttcaaagacatcaaggttattgata |
327 |
Q |
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||||| ||||||||| |||||||||| |||||||||||| || | ||||| | || ||||||||||||| ||||| ||||| ||||| |||||||| |
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| T |
22040779 |
atttatttgtgttttactatttcactctccaatctaacaagagccctttttgagttgtagatctgcaatcctaactttaaagatatcaacattattgatg |
22040878 |
T |
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| Q |
328 |
gtacat |
333 |
Q |
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|||||| |
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| T |
22040879 |
gtacat |
22040884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 18323834 - 18323916
Alignment:
| Q |
122 |
atttatatgctttttcttgataatgatgctg---ctatagaatctaatttgt-atatgcattcactgtgtcacatgtagtaca |
200 |
Q |
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|||||||| ||| |||||||||||||||||| |||||||||||| ||| | |||| |||||| |||||||||||| ||||| |
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| T |
18323834 |
atttatattcttgttcttgataatgatgctgctactatagaatctagtttttcatatacattcattgtgtcacatgtggtaca |
18323916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 325
Target Start/End: Complemental strand, 3233639 - 3233520
Alignment:
| Q |
208 |
attatgcaacttcttacttt--atttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagatctgcaatctcaacttc |
305 |
Q |
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||||||||||||||| |||| ||||||||||||||| ||||||||| | | |||||||||||||| ||||| || | |||||||||||| ||||||| |
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| T |
3233639 |
attatgcaacttcttgcttttgatttagttgtgttttgatatttcactcttccatctaacacaagtcctttttgaactgcagatctgcaatcccaacttc |
3233540 |
T |
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| Q |
306 |
aaagacatcaaggttattga |
325 |
Q |
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|||||||||| |||||||| |
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| T |
3233539 |
aaagacatcagtgttattga |
3233520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 3867025 - 3867112
Alignment:
| Q |
66 |
gatatacacgaacaatgttgcg---ttttttgcagagaaagaatcatttgattttataaatttatatgctttttcttgataatgatgctgct |
154 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3867025 |
gatatacacgaataatgttgcgattttttttgcagagaaagaatcatttgattttac----ttatatgctttttcttgataatgatgctgct |
3867112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 3866797 - 3866835
Alignment:
| Q |
29 |
tggatctgcagactggtgtggaagataggttcagctgga |
67 |
Q |
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| T |
3866797 |
tggatctgcagaccggtgtggaagataggttcggctgga |
3866835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 10204494 - 10204411
Alignment:
| Q |
208 |
attatgcaacttcttacttt--atttagttgtgttttcctatttcactttccaatctaacacaagtcattttttaattatagat |
289 |
Q |
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||||||||||||||| |||| ||||| ||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||| |
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| T |
10204494 |
attatgcaacttcttgcttttgatttatttgtgttttactatttcactctccaatctaacacaagtcatttttgaattgtagat |
10204411 |
T |
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