View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_low_61 (Length: 363)
Name: NF14349_low_61
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_61 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 348
Target Start/End: Complemental strand, 39630548 - 39630221
Alignment:
| Q |
20 |
aaaacttaatgatgagctaatggttgtggtttgacattgagtccatatagaactgataatgaaaactataacaatgatccnnnnnnnnnnnngtctgata |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| || ||||| |
|
|
| T |
39630548 |
aaaacttgatgatgagctaatggttgtggtttgacgttgagtccatatggaactgataatgaaaacta--acaatgatcctttttgttttttgtgtgata |
39630451 |
T |
|
| Q |
120 |
gcatggaactgacgtaattnnnnnnnntaaaatttcgtgcatgtattgcctttatctcatggtcttagatttcgagcctcgaacttcatnnnnnnnntaa |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39630450 |
gcatggaactgacgtaattaaaaaaa-taaaatttcgtgcatgtattgcctttatctcatggtcttagatttcgagcctcgaacttcataaaaaaa-taa |
39630353 |
T |
|
| Q |
220 |
aatttcttgtttgaatggcttttattaacatctttgtcgata--ccatttccctc-taagccactgaaaccttgctccaagcgatatctatcctcgttgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39630352 |
aatttcttgtttgaatggcttttattaacatctttgtccatataccatgtccctcctaagccactgaaaccttgctccaagcgatatctatcctcgttgt |
39630253 |
T |
|
| Q |
317 |
tcctcttctgaagaaaccttcttcattgtatt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39630252 |
tcctcttctgaagaaaccttcttcattgtatt |
39630221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 28652265 - 28652323
Alignment:
| Q |
15 |
cacagaaaacttaatgatgagctaatggttgtggtttgacattgagtccatatagaact |
73 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
28652265 |
cacaaaaaacttgatgattagctaatggttgtggtttaacatttagtccatatggaact |
28652323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University