View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_62 (Length: 360)
Name: NF14349_low_62
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 28613093 - 28612733
Alignment:
| Q |
1 |
tcaccatgtgtaatatctgttttgaaacctttgctagtgataaaatcaagtcatcatggt-----catccattttgcatcaactgctggaatcaatatgt |
95 |
Q |
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| T |
28613093 |
tcaccatgtgtcatatctgttttgaaacctttgctagtgataaaatcaagtcatcatggtgtggtcatccattttgcatcaactgctggaatcaatatgt |
28612994 |
T |
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| Q |
96 |
caatataaacatcgatgatcttaactgtttcaaacttagatgccctcaaccttcttgtaatgcagctgttgatcaagacatgattcatcaacttgcaagt |
195 |
Q |
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| T |
28612993 |
cgatataaacatcgatgatcttaactgtttcaaacttagatgccctcaaccttcttgtaatgcagctgttgatcaagacatgattcatcaacttgcaagt |
28612894 |
T |
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| Q |
196 |
aagtcaagaaagattaaatatgatcaatttttctttcggtcttacgtggaaaacaacagtgataggaaattgaagtggtgtcctgctccaaattgt---t |
292 |
Q |
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| T |
28612893 |
aagtcaagaaagattaaatatgatcaatttttctttcggtcttacgtggaaaacaacagtgataggaaattgaagtggtgtcctgctccaaattgttgtt |
28612794 |
T |
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| Q |
293 |
gttatgctataagtcatgatcaattattatcagagtctagccctagatttaatgatgatgt |
353 |
Q |
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| T |
28612793 |
gttatgctataagtcatgatcaattattatcagagtctagccctagatttaataatgatgt |
28612733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 59 - 311
Target Start/End: Complemental strand, 28604295 - 28604043
Alignment:
| Q |
59 |
gtcatccattttgcatcaactgctggaatcaatatgtcaatataaacatcgatgatcttaactgtttcaaacttagatgccctcaaccttcttgtaatgc |
158 |
Q |
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| T |
28604295 |
gtcattcattttgcatcaattgctggaatcaatacgttgatacccatatcgatgatcataactgcttcaaactcaaatgccctgagccttcttgtaatgc |
28604196 |
T |
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| Q |
159 |
agctgttgatcaagacatgattcatcaacttgcaagtaagtcaagaaagattaaatatgatcaatttttctttcggtcttacgtggaaaacaacagtgat |
258 |
Q |
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|||||| ||| ||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||| | | |
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| T |
28604195 |
agctgtagatgaagacatgattcaacaattagcaagtgagtcaagaaagattaaatacgatcaatttttctttcgttcttatgttgaaaacaacaataac |
28604096 |
T |
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| Q |
259 |
aggaaattgaagtggtgtcctgctccaaattgttgttatgctataagtcatga |
311 |
Q |
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| T |
28604095 |
atgaaattgaagtggtgtcctgctccagattgttgtaatgctataagttatga |
28604043 |
T |
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