View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_low_65 (Length: 353)
Name: NF14349_low_65
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_65 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 17701358 - 17701025
Alignment:
| Q |
1 |
ccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgataagaaaaacccaggttcaagaatctacagttgtgag |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17701358 |
ccattcgtttgataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatgataagaaaaacccaggttcaagaatctacagttgtgag |
17701259 |
T |
|
| Q |
101 |
ttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttctctaagattcttgttcaacctgaaacaaacaaacaga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17701258 |
ttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcctcgaagattcttgttcaacctgaaacaaacaaacaga |
17701159 |
T |
|
| Q |
201 |
tccacgatcatgatgtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttttttcttcttctcttcacaaccatgatcatgatgatga |
300 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17701158 |
tccatgatcatgatgtgaataacggcggcaccttgaagaagactataaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgat---ga |
17701062 |
T |
|
| Q |
301 |
tgggaaaccgaagaaccatacatgtgatgtttgtaac |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17701061 |
tgggaaaccgaagaaccatacatgtgatgtttgtaac |
17701025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 17662721 - 17663051
Alignment:
| Q |
1 |
ccattcctttgataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgataagaaaaacccaggttcaagaatctacagttgtgag |
100 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17662721 |
ccattcgtttcataaacccaaaaacagccatgatcatgatcaccaacaatctcttgaaaatgataagaaaaacccaggttcaagaatctacaattgtgag |
17662820 |
T |
|
| Q |
101 |
ttctgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgcttctctaagattcttgttcaacctgaaacaaacaaacaga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17662821 |
ttttgtcacaaaacattcacctctagtaaatcacttggtggccacaaaaccattcaccgctcctctaagattcttgttcaacctgaaacaaacaaacaga |
17662920 |
T |
|
| Q |
201 |
tccacgatcatgatgtgaataatggcggcaccttgaagaagactacaaaaattagttgtgttttttcttcttctcttcacaaccatgatcatgatgatga |
300 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17662921 |
tccgtgatcatgatgtgaataacggcggcaccttgaagaagactacaaaaattacttgtgttttttcttcttctcttcacaaccatgatc---atgatga |
17663017 |
T |
|
| Q |
301 |
tgggaaaccgaagaaccatacatgtgatgtttgt |
334 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||| |
|
|
| T |
17663018 |
ttggaaaccgaagaaccatacaagtgatgtttgt |
17663051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 21900125 - 21900051
Alignment:
| Q |
260 |
gttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaac |
337 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
21900125 |
gttttttcttcttctcttcacaatcataatcatgatgatt---ggaaactgaagaaccatacatgtgatgtttgtaac |
21900051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 22667110 - 22667050
Alignment:
| Q |
12 |
ataaacccaaaaacagccatgattatgatcaccaacaatctcttgaaaatgataagaaaaa |
72 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||| | ||||||||| ||||| |||||| |
|
|
| T |
22667110 |
ataaacccaacaacagccatgatcaagatcaccaagagactcttgaaactgatatgaaaaa |
22667050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University