View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_66 (Length: 352)

Name: NF14349_low_66
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_66
NF14349_low_66
[»] chr7 (10 HSPs)
chr7 (1-334)||(36935262-36935595)
chr7 (8-126)||(24680924-24681042)
chr7 (27-107)||(18111586-18111666)
chr7 (33-116)||(24532923-24533006)
chr7 (33-132)||(35586753-35586852)
chr7 (39-125)||(43079619-43079704)
chr7 (39-116)||(7295458-7295535)
chr7 (84-117)||(26904733-26904766)
chr7 (167-223)||(9255127-9255183)
chr7 (167-223)||(9315067-9315123)
[»] chr4 (5 HSPs)
chr4 (11-126)||(5249866-5249981)
chr4 (14-116)||(8810579-8810681)
chr4 (142-250)||(3613512-3613620)
chr4 (27-126)||(44257704-44257803)
chr4 (27-128)||(49584990-49585091)
[»] chr1 (5 HSPs)
chr1 (39-126)||(35848410-35848497)
chr1 (39-116)||(3919308-3919384)
chr1 (33-126)||(21433381-21433474)
chr1 (86-126)||(43755711-43755751)
chr1 (8-72)||(46100916-46100980)
[»] chr3 (9 HSPs)
chr3 (8-117)||(26772375-26772484)
chr3 (26-126)||(28920023-28920123)
chr3 (39-116)||(16139282-16139358)
chr3 (54-126)||(23377980-23378052)
chr3 (79-116)||(51230634-51230671)
chr3 (69-117)||(5972436-5972484)
chr3 (5-72)||(21306076-21306141)
chr3 (8-116)||(45186507-45186615)
chr3 (8-125)||(48309840-48309959)
[»] chr8 (4 HSPs)
chr8 (8-126)||(11584094-11584212)
chr8 (26-116)||(28756543-28756633)
chr8 (39-126)||(33605064-33605151)
chr8 (87-124)||(40517269-40517306)
[»] chr6 (2 HSPs)
chr6 (8-126)||(16337878-16337996)
chr6 (8-126)||(16368002-16368120)
[»] chr2 (2 HSPs)
chr2 (7-126)||(44050013-44050132)
chr2 (39-116)||(12784385-12784462)
[»] scaffold0002 (1 HSPs)
scaffold0002 (39-116)||(469624-469701)
[»] chr5 (3 HSPs)
chr5 (79-126)||(21012566-21012613)
chr5 (64-125)||(6940161-6940222)
chr5 (64-116)||(30420634-30420685)
[»] scaffold0003 (1 HSPs)
scaffold0003 (54-116)||(324050-324112)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 36935262 - 36935595
Alignment:
Q  1 aaatatatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaa 100  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36935262 aaatatatatgtattgacgcgaaaaccaaaacaatagtgagagaaaataagaacataatgaatgtatgagagggaagattgtcccaaaaattatcataaa 36935361  T
Q  101 atggttgcacaaatataacttctcttcattaaaccaacaagaaaaccataataaaatacttagtttaaatccaactgcacaaacaaaacttggattaaat 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935362 atgtttgcacaaatataacttctcttcattaaaccaacaagaaaaccataataaaatacttagtttaaatccaactgcacaaacaaaacttggattaaat 36935461  T
Q  201 gtttaaattccaaccaacaaaaaagtaaaccgtaagccataaacaataataattagtcttaaatccaaattaacaagatgggcagcaccttgattgggta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36935462 gtttaaattccaaccaacaaaaaagtaaaccgtaagccataaacaataataattagtcttaaatccaaattaacaagatgggcagcaccttgattgggta 36935561  T
Q  301 acnnnnnnntaatctaaattaacagtgatgtttg 334  Q
    ||       ||||||||||||||| |||||||||    
T  36935562 acaaaaaaataatctaaattaacaatgatgtttg 36935595  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 24680924 - 24681042
Alignment:
Q  8 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 107  Q
    ||||| ||||| ||||| |||||| ||||   |||||||  ||| |||||||||||||||||||| || ||||||||||||| |||| | |||||||||     
T  24680924 tatgtcttgacacgaaaaccaaaacaataaaaagagaaagcaaggacataatgagtgtatgagagagaggattgtcccaaaagttataagaaaatggtta 24681023  T
Q  108 cacaaatataacttctctt 126  Q
     |||||||| | |||||||    
T  24681024 tacaaatatcatttctctt 24681042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 18111586 - 18111666
Alignment:
Q  27 caaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 107  Q
    |||| |||||| |||| ||| ||| || |||||| | ||||||||| ||| |||||| |||||||||| ||||||||||||    
T  18111586 caaagtaatagagagataaagtaaaaatataatgtgagtatgagagagaaaattgtcacaaaaattattataaaatggttg 18111666  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 24532923 - 24533006
Alignment:
Q  33 aatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 116  Q
    ||||| |||||||| ||| ||||||||| | |||||||||  || |||||| |||||||||||| ||||| ||||  |||||||    
T  24532923 aatagagagagaaagtaaaaacataatgtgagtatgagagaaaaaattgtcacaaaaattatcagaaaatagttgttcaaatat 24533006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 35586753 - 35586852
Alignment:
Q  33 aatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctcttcattaa 132  Q
    ||||| |||||||||| |||| || ||| | ||||||||| |||  ||||| ||||| |||||||||||||| ||  ||||||| | ||||||| |||||    
T  35586753 aatagagagagaaaatgagaatatgatgtgagtatgagagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatcatttctctttattaa 35586852  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 43079619 - 43079704
Alignment:
Q  39 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctct 125  Q
    |||||||| |||||| |||||| | ||||||||| |||  |||||| ||||||||||| ||| |||||| |||||||| | ||||||    
T  43079619 gagagaaagtaagaatataatgtgagtatgagagagaaagttgtcc-aaaaattatcacaaagtggttgtacaaatatcatttctct 43079704  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 7295535 - 7295458
Alignment:
Q  39 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 116  Q
    |||||| |||||||| |||||| | ||||||||| |||  |||| ||||||||| |  ||||||||||| ||||||||    
T  7295535 gagagagaataagaatataatgtgagtatgagagagaaagttgttccaaaaattgtactaaaatggttgtacaaatat 7295458  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 26904733 - 26904766
Alignment:
Q  84 ccaaaaattatcataaaatggttgcacaaatata 117  Q
    |||||||||||||||||||||||| |||||||||    
T  26904733 ccaaaaattatcataaaatggttgtacaaatata 26904766  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 9255183 - 9255127
Alignment:
Q  167 aaatccaactgcacaaacaaaacttggattaaatgtttaaattccaaccaacaaaaa 223  Q
    ||||||||| || |||||||||||||||||  |||||||||| |  |||||||||||    
T  9255183 aaatccaacagctcaaacaaaacttggattttatgtttaaatccacaccaacaaaaa 9255127  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 9315067 - 9315123
Alignment:
Q  167 aaatccaactgcacaaacaaaacttggattaaatgtttaaattccaaccaacaaaaa 223  Q
    ||||||||| || |||||||||||||||||  |||||||||| |  |||||||||||    
T  9315067 aaatccaacagctcaaacaaaacttggattttatgtttaaatccacaccaacaaaaa 9315123  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 5249981 - 5249866
Alignment:
Q  11 gtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcac 110  Q
    |||||||| ||||| |||||| ||||| |||||||| ||| ||||||||| | ||||||||| |||  ||||| ||||  || |||||||||||||||||    
T  5249981 gtattgacacgaaaaccaaaacaatagagagagaaagtaaaaacataatgtgagtatgagagagaaagttgtcacaaatgttgtcataaaatggttgcac 5249882  T
Q  111 aaatataacttctctt 126  Q
    |||||| | |||||||    
T  5249881 aaatatcatttctctt 5249866  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 8810681 - 8810579
Alignment:
Q  14 ttgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaa 113  Q
    ||||| |||||  ||||| ||||| ||||||||  ||| |||||||||||||||||||| || | ||||||||||| || | | |||||||||| |||||    
T  8810681 ttgacacgaaaatcaaaacaatagagagagaaagcaaggacataatgagtgtatgagagagagggttgtcccaaaagttgtaagaaaatggttgtacaaa 8810582  T
Q  114 tat 116  Q
    |||    
T  8810581 tat 8810579  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 3613620 - 3613512
Alignment:
Q  142 aaaaccataataaaatacttagtttaaatccaactgcacaaacaaaacttggattaaatgtttaaattccaaccaacaaaaaagtaaaccgtaagccata 241  Q
    |||||| ||| |||||| |  |||||||||||||  ||||||||||| ||||||| ||||||||||  |  |||||||||||||| ||  | |||| |||    
T  3613620 aaaaccttaacaaaatagtcggtttaaatccaacatcacaaacaaaaattggattcaatgtttaaacccacaccaacaaaaaagttaatagcaagcgata 3613521  T
Q  242 aacaataat 250  Q
    |||||||||    
T  3613520 aacaataat 3613512  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 44257704 - 44257803
Alignment:
Q  27 caaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 126  Q
    ||||||||||| |||||||| ||| || |||||| | ||||||||| |||  ||||| |||||||| | | |||||| |||||||||||| | |||||||    
T  44257704 caaaataatagagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaaattgttagaaaatgattgcacaaatatcatttctctt 44257803  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 128
Target Start/End: Complemental strand, 49585091 - 49584990
Alignment:
Q  27 caaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 126  Q
    |||| |||||| |||||||| ||| || |||||| | ||||||||| |||  |||||||||||||||| | |||||||| | | |||||| | |||||||    
T  49585091 caaagtaatagagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcccaaaaattattagaaaatggtcgtagaaatatcatttctctt 49584992  T
Q  127 ca 128  Q
    ||    
T  49584991 ca 49584990  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 35848497 - 35848410
Alignment:
Q  39 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 126  Q
    ||||||||| |||  ||||||||||||||||||| || | |||||||||||||||| | |||||||||| |||||||| | |||||||    
T  35848497 gagagaaaacaagggcataatgagtgtatgagagagagggttgtcccaaaaattataagaaaatggttgtacaaatatcatttctctt 35848410  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 3919384 - 3919308
Alignment:
Q  39 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 116  Q
    |||||| |||||||| |||||| | ||||||||| |||  |||||| ||||||||| | |||||||||| ||||||||    
T  3919384 gagagagaataagaatataatgcgagtatgagagagaaagttgtcc-aaaaattataacaaaatggttgtacaaatat 3919308  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 21433381 - 21433474
Alignment:
Q  33 aatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 126  Q
    ||||| |||||||||||| ||||||||| | |||| |||| |||  ||||| ||||| || | | |||||||||| |||||||| | |||||||    
T  21433381 aatagagagagaaaataaaaacataatgtgagtataagagagaaagttgtcacaaaagttgttacaaaatggttgtacaaatatcatttctctt 21433474  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 43755711 - 43755751
Alignment:
Q  86 aaaaattatcataaaatggttgcacaaatataacttctctt 126  Q
    |||||||||||||||||||||| |||||||| | |||||||    
T  43755711 aaaaattatcataaaatggttgtacaaatatcatttctctt 43755751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 46100980 - 46100916
Alignment:
Q  8 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagag 72  Q
    ||||||||||| | ||| |||||| | |||||||||||||||| ||||| ||| | |||||||||    
T  46100980 tatgtattgacacaaaaaccaaaaaattagtgagagaaaataaaaacatgatgtgagtatgagag 46100916  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 26772484 - 26772375
Alignment:
Q  8 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 107  Q
    ||||||||||| |||||  ||||||||||| |||||||||||| ||  ||||| |  |||||||| |||  ||||| |||||||||| ||||||||||||    
T  26772484 tatgtattgacacgaaaatcaaaataatagagagagaaaataaaaatgtaatgtgaatatgagagagaaagttgtcacaaaaattattataaaatggttg 26772385  T
Q  108 cacaaatata 117  Q
      ||||||||    
T  26772384 ttcaaatata 26772375  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 28920023 - 28920123
Alignment:
Q  26 ccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctct 125  Q
    |||||||||||| |||||||||||| ||| ||||  | ||||||||| |||  ||||| |||||||||| || |||| |||| |||||||| | ||||||    
T  28920023 ccaaaataatagagagagaaaataaaaacttaatatgagtatgagagagaaagttgtcacaaaaattattatcaaatagttgtacaaatatcatttctct 28920122  T
Q  126 t 126  Q
    |    
T  28920123 t 28920123  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 16139282 - 16139358
Alignment:
Q  39 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 116  Q
    |||||| |||||||| |||||| || |||||||| ||| ||||| | |||| ||||||||||||||||| ||||||||    
T  16139282 gagagagaataagaatataatgtgtttatgagagagaaaattgttc-aaaagttatcataaaatggttgtacaaatat 16139358  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 23378052 - 23377980
Alignment:
Q  54 cataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 126  Q
    ||||||||||||||||||| || | ||||| ||||| || | | ||||||||||||||||||| | |||||||    
T  23378052 cataatgagtgtatgagagagagggttgtctcaaaagttgtaagaaaatggttgcacaaatatcatttctctt 23377980  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 51230634 - 51230671
Alignment:
Q  79 ttgtcccaaaaattatcataaaatggttgcacaaatat 116  Q
    ||||| ||||||||||||||||||||||| ||||||||    
T  51230634 ttgtcgcaaaaattatcataaaatggttgtacaaatat 51230671  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 5972436 - 5972484
Alignment:
Q  69 agagggaagattgtcccaaaaattatcataaaatggttgcacaaatata 117  Q
    ||||||||||||||||| |||||||||  |||||||| | |||||||||    
T  5972436 agagggaagattgtccctaaaattatcgcaaaatggtagtacaaatata 5972484  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 21306141 - 21306076
Alignment:
Q  5 atatatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagag 72  Q
    |||||||||||||||||||| | |||||||||  ||||||||  || ||| |||| ||||||||||||    
T  21306141 atatatgtattgacgcgaaaactaaaataata--gagagaaaggaaaaacttaattagtgtatgagag 21306076  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 45186507 - 45186615
Alignment:
Q  8 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 107  Q
    |||||||||||  ||||  |||| |||||| |||||||| ||| || |||||| | | ||||||| |||  ||||| |||||||| | | ||||||||||    
T  45186507 tatgtattgacaagaaaatcaaagtaatagagagagaaagtaaaaatataatgtgagcatgagagagaaagttgtcacaaaaattgttagaaaatggttg 45186606  T
Q  108 cacaaatat 116  Q
     ||||||||    
T  45186607 tacaaatat 45186615  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 48309959 - 48309840
Alignment:
Q  8 tatgtattgacgcgaaagccaaaataatagtgagagaaaata--agaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggt 105  Q
    ||||| ||||| ||||| | |||| ||||| |||||| ||||  ||| |||||||| |||||  ||| || | |||||||||||||||| | |||||  |    
T  48309959 tatgtcttgacacgaaaactaaaacaatagagagagagaatacaagagcataatgaatgtatacgagagatggttgtcccaaaaattataagaaaattat 48309860  T
Q  106 tgcacaaatataacttctct 125  Q
    || |||||||||| ||||||    
T  48309859 tgtacaaatataatttctct 48309840  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 11584212 - 11584094
Alignment:
Q  8 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 107  Q
    ||||| ||||| ||||| |||||| ||||| |||||||| ||| | |||||||||||||||| ||  | | ||||| |||||||| | | ||||||||||    
T  11584212 tatgttttgacacgaaaaccaaaacaatagagagagaaagtaatagcataatgagtgtatgaaagatagggttgtctcaaaaattgtaagaaaatggttg 11584113  T
Q  108 cacaaatataacttctctt 126  Q
     |||||||| | |||||||    
T  11584112 tacaaatatcatttctctt 11584094  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 116
Target Start/End: Complemental strand, 28756633 - 28756543
Alignment:
Q  26 ccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 116  Q
    |||||| ||||| |||| ||||||| || |||||| | |||||||||  || |||||| |||||||||| |||||||| ||||||||||||    
T  28756633 ccaaaacaatagagagaaaaaataaaaatataatgtgagtatgagagataaaattgtcacaaaaattattataaaatgattgcacaaatat 28756543  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 33605064 - 33605151
Alignment:
Q  39 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 126  Q
    |||||| | ||| |||| |||| | ||||||||| ||| ||||| |||||| |||||||||||||||||  ||||||| | |||||||    
T  33605064 gagagagagtaaaaacacaatgtgagtatgagagagaaaattgttccaaaagttatcataaaatggttgttcaaatatcatttctctt 33605151  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 40517306 - 40517269
Alignment:
Q  87 aaaattatcataaaatggttgcacaaatataacttctc 124  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  40517306 aaaattatcataaaatggttgtacaaatataatttctc 40517269  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 16337878 - 16337996
Alignment:
Q  8 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 107  Q
    ||||||||||| ||||| |||| | |||||||||||||| ||| || |||||| | ||||||||| |||  ||||  ||||| |||| ||||||||||||    
T  16337878 tatgtattgacacgaaaaccaagacaatagtgagagaaagtaaaaatataatgtgagtatgagagagaaagttgttacaaaagttattataaaatggttg 16337977  T
Q  108 cacaaatataacttctctt 126  Q
     || ||||| | |||||||    
T  16337978 taccaatatcatttctctt 16337996  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 16368002 - 16368120
Alignment:
Q  8 tatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttg 107  Q
    ||||||||||| | ||| |||| | |||||||||||||| ||| || |||||| | ||||||||  |||  ||||  |||||||||| ||||||||||||    
T  16368002 tatgtattgacacaaaaaccaagacaatagtgagagaaagtaaaaatataatgtgagtatgagaaagaaagttgttacaaaaattattataaaatggttg 16368101  T
Q  108 cacaaatataacttctctt 126  Q
     |||||||| | |||||||    
T  16368102 tacaaatatcatttctctt 16368120  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 44050132 - 44050013
Alignment:
Q  7 atatgtattgacgcgaaagccaaaataatagtgagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggtt 106  Q
    |||||||||||| || || |||||  ||||  || ||||| ||| ||||||||| | ||||||||| |||| ||||| ||||| || |||||||||||||    
T  44050132 atatgtattgacacggaaaccaaagcaataaagaaagaaagtaaaaacataatgtgagtatgagagagaaggttgtcacaaaagttgtcataaaatggtt 44050033  T
Q  107 gcacaaatataacttctctt 126  Q
    | |||| ||| | |||||||    
T  44050032 gtacaagtatcatttctctt 44050013  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 12784385 - 12784462
Alignment:
Q  39 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 116  Q
    |||||||| ||| || |||| | | ||||||||| |||  ||||| |||||||||| |||||||||||| ||||||||    
T  12784385 gagagaaagtaaaaatataacgtgagtatgagagagaaagttgtcacaaaaattattataaaatggttgtacaaatat 12784462  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 469624 - 469701
Alignment:
Q  39 gagagaaaataagaacataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 116  Q
    |||||||| ||| ||||||||| | || |||||| |||  ||||| |||||||||||| |||||||||| ||||||||    
T  469624 gagagaaagtaataacataatgtgagtgtgagagagaaagttgtcacaaaaattatcaaaaaatggttgtacaaatat 469701  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 21012613 - 21012566
Alignment:
Q  79 ttgtcccaaaaattatcataaaatggttgcacaaatataacttctctt 126  Q
    ||||| |||||||| |||||||||||||| |||||||||| |||||||    
T  21012613 ttgtcacaaaaattgtcataaaatggttgtacaaatataatttctctt 21012566  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 6940161 - 6940222
Alignment:
Q  64 gtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatataacttctct 125  Q
    ||||||||| |||  ||||| |||||||||| |||||||||||| |||||||| | ||||||    
T  6940161 gtatgagagagaaagttgtcacaaaaattattataaaatggttgtacaaatatcatttctct 6940222  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 30420685 - 30420634
Alignment:
Q  64 gtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 116  Q
    ||||||||| ||||||||| | ||||||||||||||||||| || ||||||||    
T  30420685 gtatgagagagaagattgtac-aaaaattatcataaaatggatgtacaaatat 30420634  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 324112 - 324050
Alignment:
Q  54 cataatgagtgtatgagagggaagattgtcccaaaaattatcataaaatggttgcacaaatat 116  Q
    |||||||| | |||||||| || |||||||||||||||||| | |||||||||  ||||||||    
T  324112 cataatgaatatatgagagagaggattgtcccaaaaattataagaaaatggttctacaaatat 324050  T

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