View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_67 (Length: 351)
Name: NF14349_low_67
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_67 |
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| [»] scaffold0595 (1 HSPs) |
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Alignment Details
Target: scaffold0595 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 1543 - 1204
Alignment:
| Q |
1 |
tgcacacatatgttgtgagacgccatgttggcgtgattgcaatcgttgttctgtaaatagttttattcaggtccccgtggtgagcactgatgtttctgaa |
100 |
Q |
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| T |
1543 |
tgcacacatatgttgtgagacgccatgttggcgtgattgcaatcgttgttctgtaaatagttttattgaggtccccgtggtgagcaccgatgtttctgaa |
1444 |
T |
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| Q |
101 |
tgaacaagtagggtgtacctcatgtgattcattcttcggtggttctggttggatcttttgcgactagtcatacactcctccaaagagggaggtgtgcctg |
200 |
Q |
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| T |
1443 |
tgaacaagtagggtgtacctcatgtgattcattcttcgatggttctggttggatcttttgcgactagtcatacactcctccaaagagggaggtgtgcctg |
1344 |
T |
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| Q |
201 |
caaaagacactctaaccgccaaagtgaggttgagtgcaaacatgtnnnnnnnnntaggttgattagtgagcatatgtgaaataagtgaagtgattgtacc |
300 |
Q |
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| T |
1343 |
caaaaaacactctaaccgccaaagtgaggctgagtgcaaacatgt-aaataaaataggttgattagtgagcatatgtgaaataagtgaagtgattgtacc |
1245 |
T |
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| Q |
301 |
tggtgcaatggccctatatttatagttatagatctgatgat |
341 |
Q |
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| T |
1244 |
tggtgcaatggccctatatttatagttatagatctgatgat |
1204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 8328489 - 8328828
Alignment:
| Q |
1 |
tgcacacatatgttgtgagacgccatgttggcgtgattgcaatcgttgttctgtaaatagttttattcaggtccccgtggtgagcactgatgtttctgaa |
100 |
Q |
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| T |
8328489 |
tgcacacatatgttgtgagacgccatgttggcgtgattgcaatcgttgttctgtaaatagttttattgaggtccccgtggtgagcaccgatgtttctgaa |
8328588 |
T |
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| Q |
101 |
tgaacaagtagggtgtacctcatgtgattcattcttcggtggttctggttggatcttttgcgactagtcatacactcctccaaagagggaggtgtgcctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8328589 |
tgaacaagtagggtgtacctcatgtgattcattcttcgatggttctggttggatcttttgcgactagtcatacactcctccaaagagggaggtgtgcctg |
8328688 |
T |
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| Q |
201 |
caaaagacactctaaccgccaaagtgaggttgagtgcaaacatgtnnnnnnnnntaggttgattagtgagcatatgtgaaataagtgaagtgattgtacc |
300 |
Q |
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| T |
8328689 |
caaaaaacactctaaccgccaaagtgaggctgagtgcaaacatgt-aaataaaataggttgattagtgagcatatgtgaaataagtgaagtgattgtacc |
8328787 |
T |
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| Q |
301 |
tggtgcaatggccctatatttatagttatagatctgatgat |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
8328788 |
tggtgcaatggccctatatttatagttatagatctgatgat |
8328828 |
T |
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