View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_68 (Length: 348)
Name: NF14349_low_68
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_68 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 82 - 331
Target Start/End: Original strand, 32594441 - 32594690
Alignment:
| Q |
82 |
gaaccagaaacttaaactcacacagcaacacggtcaggagtgaaagcaccagtagcagctttatactcaaacctacaatagtaatcctcagaacctacat |
181 |
Q |
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| T |
32594441 |
gaaccagaaacttaaactcacacagcaacacggtcaggagtgaaagcaccagtagcagctttatactcaaacctacaatagtaatcctcagaacctacat |
32594540 |
T |
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| Q |
182 |
tctcaagcttagtatagttcttgaaagagtgaacaatgcatttcccttcaatagtgtgagcactttgaacatcaaaatggtcagataaaaacaattcctt |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32594541 |
tctcaagcttagtatagttcttgaaagagtgaacaatgcatttcccttcaatagtgtgagcactttgaacatcaaaatggtcagataaaaacagttcctt |
32594640 |
T |
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| Q |
282 |
agctccatgaaactgtcttcttccaccaatagattcttcaggtctataat |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32594641 |
agctccatgaaactgtcttcttccaccaatagattcttcaggtctataat |
32594690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 293
Target Start/End: Complemental strand, 38474767 - 38474697
Alignment:
| Q |
223 |
ttcccttcaatagtgtgagcactttgaacatcaaaatggtcagataaaaacaattccttagctccatgaaa |
293 |
Q |
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| T |
38474767 |
ttcccttcaattgtgtcagcactatgaacatcataatgattagacaaaaacagctccttatctccatgaaa |
38474697 |
T |
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