View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14349_low_69 (Length: 347)

Name: NF14349_low_69
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14349_low_69
NF14349_low_69
[»] chr3 (14 HSPs)
chr3 (17-337)||(6917606-6917926)
chr3 (84-337)||(6590575-6590816)
chr3 (17-147)||(6142791-6142921)
chr3 (219-337)||(7750787-7750905)
chr3 (90-146)||(6245862-6245918)
chr3 (17-147)||(6169399-6169523)
chr3 (28-141)||(13270019-13270126)
chr3 (94-147)||(6266270-6266323)
chr3 (82-143)||(7750566-7750627)
chr3 (82-142)||(6883071-6883131)
chr3 (90-145)||(6238237-6238292)
chr3 (17-147)||(6721488-6721612)
chr3 (90-147)||(6259729-6259786)
chr3 (112-146)||(6850162-6850196)
[»] scaffold0425 (1 HSPs)
scaffold0425 (112-146)||(13270-13304)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 6917606 - 6917926
Alignment:
Q  17 caagggtcgtattacctatcccaataagactaactatactgattatgggtacccagttgtcagcatcactgtcactgtctgatagtaaaaattcaattat 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6917606 caagggtcgtattacctatcccaataagaccaactatactgattatgggtacccggttgtcagcatcactgtcactgtctgatagtaaaaattcaattat 6917705  T
Q  117 ttcctctttctcatgctctctaccatatatggtacaatcatcatccacccaaaatgcatttggaaatatctgcggagtgactccatctttattacttgct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6917706 ttcctctttctcatgctctctaccatatatggtacaatcatcatccacccaaaatgcatttggaaatatctgcggagtgactccatctttattacttgct 6917805  T
Q  217 tgaagtcccaatctatcctttttctctgcaagaaactctaccttctgtatcaatgcttcaatcatagcctcaaatcctcgattactaaaaagtgaaagaa 316  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6917806 tgaagtcccaatctatcctgtttctctgcaagaaactctaccttctgtatcaatgcttcaatcctagcctcaaatcctcgattactaaaaagtgaaagaa 6917905  T
Q  317 agtgttgtatcttgccctttg 337  Q
    ||||||| ||| |||||||||    
T  6917906 agtgttgcatcctgccctttg 6917926  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 84 - 337
Target Start/End: Complemental strand, 6590816 - 6590575
Alignment:
Q  84 actgtcactgtctgatagtaaaaattcaattatttcctctttctcatgctctctaccatatatggtacaatcatcatccacccaaaatgcatttggaaat 183  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||  | |  |||   |||   ||  |||| |||| |||    
T  6590816 actgtgactgtctgaaagtaaaaatttaattatttcctctttctcatgctctctaccatatatgacagatacatgtgcca---aaggtgcagttggtaat 6590720  T
Q  184 atctgcggagtgactccatctttattacttgcttgaagtcccaatctatcctttttctctgcaagaaactctaccttctgtatcaatgcttcaatcatag 283  Q
    ||||| ||||| |||| | ||| ||||         ||||||||| |||||||||  ||||||||||||||||  |||||||||||||||| |||| |||    
T  6590719 atctggggagtcactctaccttcatta---------agtcccaatttatccttttgatctgcaagaaactctaggttctgtatcaatgctttaatcctag 6590629  T
Q  284 cctcaaatcctcgattactaaaaagtgaaagaaagtgttgtatcttgccctttg 337  Q
    | ||||||||||||||| ||||| ||||||||||| || |||||||||||||||    
T  6590628 cttcaaatcctcgattaataaaacgtgaaagaaagcgtcgtatcttgccctttg 6590575  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 6142791 - 6142921
Alignment:
Q  17 caagggtcgtattacctatcccaataagactaactatactgattatgggtacccagttgtcagcatcactgtcactgtctgatagtaaaaattcaattat 116  Q
    ||||||| || ||||||||||||  |||||  |||||||||||||||||||||| ||||||| | ||||| ||||||||||  |||||||| | ||| ||    
T  6142791 caagggttgtcttacctatcccaggaagacctactatactgattatgggtacccggttgtcaccgtcactttcactgtctgtaagtaaaaaattaatcat 6142890  T
Q  117 ttcctctttctcatgctctctaccatatatg 147  Q
    || |||||||||||| | |||||||||||||    
T  6142891 tttctctttctcatggtatctaccatatatg 6142921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 7750787 - 7750905
Alignment:
Q  219 aagtcccaatctatcctttttctctgcaagaaactctaccttctgtatcaatgcttcaatcatagcctcaaatcctcgattactaaaaagtgaaagaaag 318  Q
    ||||||||||||||||||||  || |||||||||||||  ||||||||||||||||||||| || | ||||||||||| ||| |||||||||||||| ||    
T  7750787 aagtcccaatctatccttttgatcagcaagaaactctaggttctgtatcaatgcttcaatcctatcttcaaatcctcgcttaataaaaagtgaaagatag 7750886  T
Q  319 tgttgtatcttgccctttg 337  Q
     || | ||||| |||||||    
T  7750887 cgtcgcatctttccctttg 7750905  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 6245862 - 6245918
Alignment:
Q  90 actgtctgatagtaaaaattcaattatttcctctttctcatgctctctaccatatat 146  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  6245862 actgtctgaaagtaaaaattcaattatttcttctttctcatgctctctaccatatat 6245918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 6169399 - 6169523
Alignment:
Q  17 caagggtcgtattacctatcccaataagactaactatactgattatgggtacccagttgtcagcatcactgtcactgtctgatagtaaaaattcaattat 116  Q
    ||||||| || |||||||||||  | ||||  || ||||||||||||||||||| ||||||| |      || ||||| ||| |||||||| ||||||||    
T  6169399 caagggttgtcttacctatcccgttcagacccacgatactgattatgggtacccggttgtcacc------gtgactgtatgaaagtaaaaaatcaattat 6169492  T
Q  117 ttcctctttctcatgctctctaccatatatg 147  Q
    ||| |||||||||||||||||||||||||||    
T  6169493 ttcttctttctcatgctctctaccatatatg 6169523  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 13270126 - 13270019
Alignment:
Q  28 ttacctatcccaataagactaactatactgattatgggtacccagttgtcagcatcactgtcactgtctgatagtaaaaattcaattatttcctctttct 127  Q
    ||||| ||||| || ||||  |||||||||||||||||||||| |||| || |||| |||||      ||| |||| ||| || ||||||||||||||||    
T  13270126 ttacccatccccatcagacccactatactgattatgggtacccggttgacaccatccctgtc------tgaaagtataaaatcgattatttcctctttct 13270033  T
Q  128 catgctctctacca 141  Q
    ||||||||||||||    
T  13270032 catgctctctacca 13270019  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 6266270 - 6266323
Alignment:
Q  94 tctgatagtaaaaattcaattatttcctctttctcatgctctctaccatatatg 147  Q
    ||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  6266270 tctgaaagtaaaaaatcaatcatttcctcttgctcatgctctctaccatatatg 6266323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 7750566 - 7750627
Alignment:
Q  82 tcactgtcactgtctgatagtaaaaattcaattatttcctctttctcatgctctctaccata 143  Q
    ||||||| ||||||||| |||||||||||| | ||||||||| |||||||||| ||||||||    
T  7750566 tcactgtaactgtctgaaagtaaaaattcagtcatttcctctatctcatgctccctaccata 7750627  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 6883071 - 6883131
Alignment:
Q  82 tcactgtcactgtctgatagtaaaaattcaattatttcctctttctcatgctctctaccat 142  Q
    ||||||| | |||| || |||||||||| ||||| ||||||||||||||||||||||||||    
T  6883071 tcactgtgaatgtcagaaagtaaaaatttaattaattcctctttctcatgctctctaccat 6883131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 6238237 - 6238292
Alignment:
Q  90 actgtctgatagtaaaaattcaattatttcctctttctcatgctctctaccatata 145  Q
    ||||||||| ||||||||||| | |||||||||||| ||| |||||||||||||||    
T  6238237 actgtctgaaagtaaaaattcgactatttcctctttttcacgctctctaccatata 6238292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 6721612 - 6721488
Alignment:
Q  17 caagggtcgtattacctatcccaataagactaactatactgattatgggtacccagttgtcagcatcactgtcactgtctgatagtaaaaattcaattat 116  Q
    ||||||| || |||||||||||||| ||||  ||||||||||||||||| |||  ||||      ||||||||||| || || || || || |  |||||    
T  6721612 caagggttgtcttacctatcccaatcagacccactatactgattatgggcacctggttg------tcactgtcactatcagaaagcaagaaattgattat 6721519  T
Q  117 ttcctctttctcatgctctctaccatatatg 147  Q
    ||| |||||||||||||||| ||||||||||    
T  6721518 ttcttctttctcatgctctcgaccatatatg 6721488  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 6259729 - 6259786
Alignment:
Q  90 actgtctgatagtaaaaattcaattatttcctctttctcatgctctctaccatatatg 147  Q
    ||||||||| ||||||||||  |||||||||||||| ||| | |||||||||||||||    
T  6259729 actgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatg 6259786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 6850196 - 6850162
Alignment:
Q  112 attatttcctctttctcatgctctctaccatatat 146  Q
    ||||| |||||||||||||||||||||||||||||    
T  6850196 attatatcctctttctcatgctctctaccatatat 6850162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 13304 - 13270
Alignment:
Q  112 attatttcctctttctcatgctctctaccatatat 146  Q
    ||||| |||||||||||||||||||||||||||||    
T  13304 attatatcctctttctcatgctctctaccatatat 13270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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