View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_7 (Length: 621)
Name: NF14349_low_7
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 19 - 608
Target Start/End: Original strand, 50466826 - 50467416
Alignment:
| Q |
19 |
gatcatgggtcctaaaataatggcttagttgtagataaaagtaacacttagcaaacttgaaaatgaggtttgagtagaggtccccaacattatttcttat |
118 |
Q |
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| T |
50466826 |
gatcatgggtcctaaaataatggcttagttgtagataaaagtaacacttagcaaacttgaaaatgaggtttgagtagaggtccccaacattatttcttat |
50466925 |
T |
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| Q |
119 |
caaattaaagccattaagcttttaatagtaaacatgacaaagaataattgtaacctcatgatacataaaaggaatgataactatattacactaatgttga |
218 |
Q |
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| T |
50466926 |
caaattaaagccattaagcttttaatagtaaacatgacaaagaataattgtaacctcatgatacataaaaggaatgataactatattacactaatgttga |
50467025 |
T |
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| Q |
219 |
tgaatcaataagtactttggtagtgattacatccaatggatgccttctacttaaggagaaaactccacgtgaattttatattgaataactgtcatttaat |
318 |
Q |
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| T |
50467026 |
tgaatcaataagtactttggtagtgattacatccaatggatgccttctacttaaggagaaaactccacgtgaattttatattgaataactgtcatttaat |
50467125 |
T |
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| Q |
319 |
tttaggcccttgttttcacaagtctggttttactatagatcctcgtgaatctatatggatatttaatttcccacttgcactgttttgttgtcccattctt |
418 |
Q |
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| T |
50467126 |
tttaggcccttgttttcacaagtctggttttactatagatcctcgtgaatctatatggatatttaatttcccacttgcactgttttgttgtcccattctt |
50467225 |
T |
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| Q |
419 |
atgagaaaaatattg-tttcttttttgttttaagtcttacatatattttgttagttcagcagaaagataaataaaatctgataaataattattttgacgg |
517 |
Q |
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| T |
50467226 |
atgagaaaaatattgttttttttttttttttaagtcttacatatattttgttagttcagcagaaagataaataaaatctgataaataattattttgacga |
50467325 |
T |
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| Q |
518 |
aatttgaatcccgaatctctcaaataaaataatcatatgaaaaaattattgatgaaaatgtttttctatcatatataaatttacacaggtt |
608 |
Q |
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| T |
50467326 |
aatttgaatcccgaatctctcaaataaaataatcatatgagaaaattattgatgaaaatgtttttctattatgtataaatttacacaggtt |
50467416 |
T |
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