View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_70 (Length: 339)
Name: NF14349_low_70
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 47574899 - 47575210
Alignment:
| Q |
14 |
aatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaaaggttgttatgc |
113 |
Q |
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| T |
47574899 |
aatatgcaatgcatggatatttttctgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaaaggttgttatgc |
47574998 |
T |
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| Q |
114 |
tgaatcagagtgtgttgatgacatccggagatatgtgagtacaacatttcttacacatctcattatagagttgaaaaaatga-nnnnnnncattaacaaa |
212 |
Q |
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| T |
47574999 |
tgaatcagaatgtgttgatgacatccggagatatgtgagtacaacatttcttacacatctcattatagagttgaaaaaatgattttttttcattaacaaa |
47575098 |
T |
|
| Q |
213 |
tgaatattgtaggcttggacaaaatgggcagagcaaacaccaatggaactaatggatcctaatatagaaggaacttattcccatgaagaagtcatcaact |
312 |
Q |
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| T |
47575099 |
tggatattgtaggcttggacaaaatggccagagcaaacaccaatggaactaatggatcctaatatagaaggaacttattcccatgaagaagtcatcaact |
47575198 |
T |
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| Q |
313 |
acatccacattg |
324 |
Q |
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|||||||||||| |
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| T |
47575199 |
acatccacattg |
47575210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 47584582 - 47584898
Alignment:
| Q |
12 |
agaatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaaaggttgttat |
111 |
Q |
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| T |
47584582 |
agaatatgccatgcatggatacttttctgtgaaatcagatgtgtatagttttggaatcatggttctagagattattagtggaaagaggaaaggttgttcg |
47584681 |
T |
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| Q |
112 |
gctgaatcagagtgtgttgatgacatccggagatatgtgagtacaacatttcttacacatctcat-tatagag---ttgaaaaaatgannnnnnncatta |
207 |
Q |
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| T |
47584682 |
gctgaatcagagtgtgttgatgacatccggagatatgtgagtcaaaaatttcttagacttctcttgaatagagtttttgaaagaattgttttcttaattg |
47584781 |
T |
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| Q |
208 |
acaaatgaatattgtaggcttggacaaaatgggcagagcaaacaccaatggaactaatggatcctaatatagaaggaacttattcccatgaagaagtcat |
307 |
Q |
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| T |
47584782 |
acaaatgaatattgtaggcttggacaaaatgggcagagcaaacaccacttgaactaatggatcctagcatggaaggaacttattcacatgaagaagtcat |
47584881 |
T |
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| Q |
308 |
caactacatccacattg |
324 |
Q |
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| T |
47584882 |
caaatacatccacattg |
47584898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 47627681 - 47627769
Alignment:
| Q |
13 |
gaatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaa |
101 |
Q |
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|||||||||||||||||| | ||||| | |||||||||||| | |||||| ||| | |||||||| || |||||||||||||| ||||| |
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| T |
47627681 |
gaatatgcaatgcatggacaattttcagagaagtctgatgtttttagttttggagtgatggttctcgagattattagtggaaaaaagaa |
47627769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 10401511 - 10401422
Alignment:
| Q |
12 |
agaatatgcaatgcatggatatttttccgtgaagtctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaa |
101 |
Q |
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|||||||||||||| |||| | ||||| | ||| |||||||| |||||||| ||| ||||| || | |||||||||| |||||||||||| |
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| T |
10401511 |
agaatatgcaatgcttggacaattttcggagaaatctgatgtttatagttttggagtcatgattttggaaattattactggaaagaagaa |
10401422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 20233515 - 20233570
Alignment:
| Q |
46 |
tctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaa |
101 |
Q |
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| T |
20233515 |
tctgatgtttatagttttggagtcatggttttagaaattattaccggaaagaagaa |
20233570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 22127499 - 22127554
Alignment:
| Q |
46 |
tctgatgtgtatagtttcggaatcatggttctagaaattattagtggaaagaagaa |
101 |
Q |
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|||||||| |||||||| ||| |||||||| |||||||||||| ||||||||||| |
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| T |
22127499 |
tctgatgtttatagttttggagtcatggttttagaaattattaccggaaagaagaa |
22127554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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