View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_71 (Length: 338)
Name: NF14349_low_71
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_71 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 37203189 - 37202876
Alignment:
| Q |
17 |
agtggaaccagagttggaaaatgaagatgctgaagatgatgaaaattcaatagtaggtacaccaaaggtgggggtattaggtgaggctgaaatttcattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37203189 |
agtggaaccagagttggaaaatgaagatgctgaagatgttgaaaattcaatagtaggtacaccaaaggtgggggtattaggtgaggctgaaatttcattg |
37203090 |
T |
|
| Q |
117 |
tccagtcattcaaatcaaatagctgaacaaaatacatttgaagcagaaagtgtacctcttgagcaggagccattggcaggggaaattcaagcctcacata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37203089 |
tccagtcattcaaatcaaatagctgaacaaaatacatttgaagcagaaagtgtacctcttgagcaggagccattggcaggggaaattcaagcctcacata |
37202990 |
T |
|
| Q |
217 |
ggtttgaggaagcaacaaattggaagtgtatttcaagggaaggatgttcgtccccatcttttagtctaaaactaactgaaatggtggaaatgtggggaca |
316 |
Q |
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| T |
37202989 |
ggtttgaggaagcaacaaatcggaagtgtatttcaagggaaggatgttcgtccccatcttttagtctaaaactaactgaaatggtggaaatgtggggaca |
37202890 |
T |
|
| Q |
317 |
gcaagctgatgatg |
330 |
Q |
| |
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|||||||||||||| |
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| T |
37202889 |
gcaagctgatgatg |
37202876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 301
Target Start/End: Complemental strand, 37183942 - 37183834
Alignment:
| Q |
193 |
caggggaaattcaagcctcacataggtttgaggaagcaacaaattggaagtgtatttcaagggaaggatgttcgtccccatcttttagtctaaaactaac |
292 |
Q |
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| T |
37183942 |
caggggaaattcaagcctcaaataggtttgaggaagtgacaaatatgaagtctatttcaagggctggatgtctatccccatcttttagcctcaaactaac |
37183843 |
T |
|
| Q |
293 |
tgaaatggt |
301 |
Q |
| |
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|||| |||| |
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| T |
37183842 |
tgaagtggt |
37183834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 301
Target Start/End: Complemental strand, 37195074 - 37194966
Alignment:
| Q |
193 |
caggggaaattcaagcctcacataggtttgaggaagcaacaaattggaagtgtatttcaagggaaggatgttcgtccccatcttttagtctaaaactaac |
292 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||| |||||| |||||||||||||| || |||||||| |
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| T |
37195074 |
caggggaaattcaagcctcaaataggtttgaggaagtgacaaatatgaagtctatttcaagggctggatgtctatccccatcttttagcctcaaactaac |
37194975 |
T |
|
| Q |
293 |
tgaaatggt |
301 |
Q |
| |
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|||| |||| |
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| T |
37194974 |
tgaagtggt |
37194966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 37184179 - 37183971
Alignment:
| Q |
19 |
tggaaccagagttggaaaatgaagatgctgaagatgatgaaaattcaatagtaggtacaccaaagg---tgggggtattaggtgaggctgaaatttcatt |
115 |
Q |
| |
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|||||||||||||||| || |||| |||||| ||| ||||||||||| || ||||| ||| || |||| | |||||||||||||||||| ||||| |
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| T |
37184179 |
tggaaccagagttggagcataaagaggctgaaaatgttgaaaattcaacaggaggtatacctgagaatatgggagaattaggtgaggctgaaatgtcatt |
37184080 |
T |
|
| Q |
116 |
gtccagtcattcaaatcaaatagctgaacaaaatacatttgaagcagaaagtgtacctcttgagcaggagccattggcaggggaaattcaagcctcacat |
215 |
Q |
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||| | |||||||| |||| |||| ||| | | |||| |||| ||| || |||||||| ||||| | ||| ||||| |||||||||||||| || |
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| T |
37184079 |
ctcccataattcaaataaaatggctggacagattgcattagaag---aaaaggtccctcttgaaaaggagtctttgtcagggaaaattcaagcctcaaat |
37183983 |
T |
|
| Q |
216 |
aggtttgaggaa |
227 |
Q |
| |
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|||||||||||| |
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| T |
37183982 |
aggtttgaggaa |
37183971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 37195311 - 37195103
Alignment:
| Q |
19 |
tggaaccagagttggaaaatgaagatgctgaagatgatgaaaattcaatagtaggtacaccaaagg---tgggggtattaggtgaggctgaaatttcatt |
115 |
Q |
| |
|
|||||||||||||||| || |||| |||||| ||| ||||||||||| || ||||| ||| || |||| | |||||||||||||||||| ||||| |
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| T |
37195311 |
tggaaccagagttggagcataaagaggctgaaaatgttgaaaattcaacaggaggtatacctgagaatatgggagaattaggtgaggctgaaatgtcatt |
37195212 |
T |
|
| Q |
116 |
gtccagtcattcaaatcaaatagctgaacaaaatacatttgaagcagaaagtgtacctcttgagcaggagccattggcaggggaaattcaagcctcacat |
215 |
Q |
| |
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||| | |||||||| |||| |||| ||| | | |||| |||| ||| || |||||||| ||||| | ||| ||||| |||||||||||||| || |
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| T |
37195211 |
ctcccataattcaaataaaatggctggacagattgcattagaag---aaaaggtccctcttgaaaaggagtctttgtcagggaaaattcaagcctcaaat |
37195115 |
T |
|
| Q |
216 |
aggtttgaggaa |
227 |
Q |
| |
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|||||||||||| |
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| T |
37195114 |
aggtttgaggaa |
37195103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 42 - 211
Target Start/End: Original strand, 413675 - 413847
Alignment:
| Q |
42 |
gatgctgaagatgatgaaaattcaatagtaggtacacca---aaggtgggggtattaggtgaggctgaaatttcattgtccagtcattcaaatcaaatag |
138 |
Q |
| |
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||||||||| ||| ||||||||||| |||| || |||| ||||||| || | |||||||||||||||| |||||||||| | |||||||||||| | |
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| T |
413675 |
gatgctgaaaatgtggaaaattcaatggtagctataccagtgaaggtggaggaactaggtgaggctgaaatgtcattgtccaatggttcaaatcaaatgg |
413774 |
T |
|
| Q |
139 |
ctgaacaaaatacatttgaagcagaaagtgtacctcttgagcaggagccattggcaggggaaattcaagcctc |
211 |
Q |
| |
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|||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
413775 |
ctgaacaaaataattttgaaacagaaagtgaccctcttgagcaggaggcattggcaggggaaattcaagcctc |
413847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 413883 - 413950
Alignment:
| Q |
238 |
ggaagtgtatttcaagggaaggatgttcgtccccatcttttagtctaaaactaactgaaatggtggaa |
305 |
Q |
| |
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|||||||||||||||||| |||||||| ||||| || ||||| || |||||||||| ||||| |||| |
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| T |
413883 |
ggaagtgtatttcaagggctggatgttcatccccgtcctttagcctcaaactaactgcaatggcggaa |
413950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 5364973 - 5365034
Alignment:
| Q |
189 |
ttggcaggggaaattcaagcctcacataggtttgaggaagcaacaaattggaagtgtatttc |
250 |
Q |
| |
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||||||| ||||| |||||||||| |||| |||||||||||||||||| ||||| |||||| |
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|
| T |
5364973 |
ttggcagaggaaactcaagcctcaaatagatttgaggaagcaacaaatatgaagtctatttc |
5365034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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