View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_72 (Length: 335)
Name: NF14349_low_72
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_72 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 78 - 335
Target Start/End: Original strand, 10291703 - 10291953
Alignment:
| Q |
78 |
atctaccgaacagcggtggcggaacgagataacgacggcggagattggaaggtgaaacgaaattgtgataagggttgttatatagcaatgttgacgataa |
177 |
Q |
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| T |
10291703 |
atctaccgaacagcggtggcgcggcgagataacgacggcggagattggaaggtgaaacgaaattgtgataagggttgttatatagcaatgttaacgataa |
10291802 |
T |
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| Q |
178 |
acatagtatttatttggacttggaagttggaaccaccatatatagatgtttccacaattgacatagttaacttttcaatttgattaactaaagcagatat |
277 |
Q |
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| T |
10291803 |
acatagtatttatttggacttgg-------aaccaccatatatagatgtttccacaattgacatagttaacttttcaatttgatcaactaaagcagatct |
10291895 |
T |
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| Q |
278 |
gagtttgagaaagaaaaatttgtagatctcgaacaaaattcatcttccaagtccaaat |
335 |
Q |
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| T |
10291896 |
gagtttgagaaagaaaaatttgtagatctggaacaaaattcatcttccaactccaaat |
10291953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 242 - 335
Target Start/End: Complemental strand, 23694095 - 23694003
Alignment:
| Q |
242 |
agttaacttttcaatttgattaactaaagcagatatgagtttgagaaagaaaaatttgtagatctcgaacaaaattcatcttccaagtccaaat |
335 |
Q |
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| T |
23694095 |
agttaacttttcaatttgatcaactaaagcagatatgggtttgagaaagaaaagaa-gtagatctggaaaaaaattcatcttccaagtccaaat |
23694003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 204 - 335
Target Start/End: Complemental strand, 23654206 - 23654076
Alignment:
| Q |
204 |
ttggaaccaccatatatagatgtttccacaattgacatagttaacttttcaatttgattaactaaagcagatatgagtttgagaaagaaaaatttgtaga |
303 |
Q |
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| T |
23654206 |
ttggaaccaccatatatagatgtttccacaattgacagagttaacttttcaatttgatcaactaaagcatatctgggtttgagaaaggaaaa-aagtaga |
23654108 |
T |
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| Q |
304 |
tctcgaacaaaattcatcttccaagtccaaat |
335 |
Q |
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| T |
23654107 |
tctggaaaaaaattcatcttccaagtccaaat |
23654076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 5527533 - 5527584
Alignment:
| Q |
83 |
ccgaacagcggtggcggaacgagataacgacggcggagattggaaggtgaaa |
134 |
Q |
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| T |
5527533 |
ccgaacagcagtggcgcgacgagataacgatggcggagattggaaggtgaaa |
5527584 |
T |
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