View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_74 (Length: 333)
Name: NF14349_low_74
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_74 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 20318993 - 20318680
Alignment:
| Q |
1 |
atacaaaaaagttgtggtcattttgatgagtatctttggcaataagctccaatagttattgtgctcttaaacttcgggcgtaatctagctttccttcata |
100 |
Q |
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| T |
20318993 |
atacaaaaaagttgtggtcattttgatgaatatcttcggcaataagctccaatagttattgtgctcttaaacttcgggcgtaatctagctttccttcata |
20318894 |
T |
|
| Q |
101 |
gaatcattggacaaccaccctagtccaccaacttcatgacaacattgtctatgatgaactccaaatcctcctaagttgactggtaagttatagataattc |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20318893 |
gaatcattggacaaccaacctagtccaccaacttcatgacaacattgtctatgatgaactcc-aatcctcctaagttgactggtaagttatagataattc |
20318795 |
T |
|
| Q |
201 |
cgtcatcttatttttaattcgccattcctataccattccataaaagggttgcatttccaagtttccgatcttctcgaaggtaaagtgaggcactatattt |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20318794 |
cgtcatcttatttttaattcgccattcc--taccattccataaaagggttgcatttccaagtttccgatcttctctaaggtaaagtgaggcactatattt |
20318697 |
T |
|
| Q |
301 |
gatatggttcaggaatc |
317 |
Q |
| |
|
|||||||||| |||||| |
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| T |
20318696 |
gatatggttccggaatc |
20318680 |
T |
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