View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14349_low_77 (Length: 328)
Name: NF14349_low_77
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 312
Target Start/End: Original strand, 44703955 - 44704256
Alignment:
| Q |
11 |
tagcaaaggcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagc |
110 |
Q |
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| T |
44703955 |
tagcaaaggcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagc |
44704054 |
T |
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| Q |
111 |
tacgttttccttcattgcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgtt |
210 |
Q |
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| T |
44704055 |
tacgttttccttcattccgttaaaaaccgtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgtt |
44704154 |
T |
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| Q |
211 |
actccagtacgtgctcgtccgatcattgatgatctcttcacgctgaaggtaggtttatcaccgtctcttctttcacctttaaagccttcccaccgttgat |
310 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44704155 |
actccagtacgtgctcgtccgatcatagatgacctcttcacactgaaggtaggtttatcaccgtctcttctttcacctttaaagccttcccaccgttgat |
44704254 |
T |
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| Q |
311 |
gt |
312 |
Q |
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|| |
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| T |
44704255 |
gt |
44704256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 44714660 - 44714958
Alignment:
| Q |
13 |
gcaaaggcagcgtcaaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagcta |
112 |
Q |
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| T |
44714660 |
gcaaaagcagcatcaaaaccaggcttaacacaaagagagaacacttccttcccaagcgtattacctgtagtggggtccactttacgataaatctcagcca |
44714759 |
T |
|
| Q |
113 |
cgttttccttcattgcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttac |
212 |
Q |
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| T |
44714760 |
caatttccttcatcgcgttaaaaactttgcaaccacgttgagagaaacacccttcgatatggtactcctcacctgggttatcgtacacctccactgtcac |
44714859 |
T |
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| Q |
213 |
tccagtacgtgctcgtccgatcattgatgatctcttcacgctgaaggtaggtttatcaccgtctcttctttcacctttaaagccttcccaccgttgatg |
311 |
Q |
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| T |
44714860 |
tcccgcacgtggtcgtccgatcattgatgatctcttcacgctgaaggttggtttatcaccttccattttttcacctttaaagccttcccaccgttgatg |
44714958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 311
Target Start/End: Complemental strand, 2278213 - 2277954
Alignment:
| Q |
52 |
aacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcattgcgttaaaaacggtgcaacaacgtt |
151 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||| || || ||| | || ||||||| | || || | || |
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| T |
2278213 |
aacacttctttcccaagcataacactagtggtggggtccactttacgacgaatctcagccactaatttctttgtggcattaaaaatcttacagcatcttt |
2278114 |
T |
|
| Q |
152 |
gagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactccagtacgtgctcgtccgatcattgatgatctcttcac |
251 |
Q |
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| | ||| || ||||||||| |||||||| |||| |||||||||| ||||||||||||| | | || ||| |||| ||||||||||| ||||| |
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| T |
2278113 |
gtgggaaacacccttcaatgaggtactccacacctgggttatcgtgtacctccactgttatggtcattcttgaccgtgcgattattgatgatcttttcac |
2278014 |
T |
|
| Q |
252 |
gctgaaggtaggtttatcaccgtctcttctttcacctttaaagccttcccaccgttgatg |
311 |
Q |
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||||| | ||||||||||||||| |||| || ||||| || |||||||| | |||||| |
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| T |
2278013 |
attgaagattggtttatcaccgtcttttctctctcctttgaatccttcccatctttgatg |
2277954 |
T |
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