View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14349_low_78 (Length: 328)
Name: NF14349_low_78
Description: NF14349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14349_low_78 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 34322555 - 34322876
Alignment:
| Q |
1 |
cttacaacttttagtatattcaattaggtacaatctaaagagagcaatgaaatcttttgttgggattgtcagcaagaaaaatactaatttgagtagacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34322555 |
cttacaacttttagtatattcaattaggtacaatctaaagagagcgatgaaatcttttgttgggattgtcagcaagaaaaatactaatttgagtagacat |
34322654 |
T |
|
| Q |
101 |
---gaagaaagtggaagaatttccttattgtttcttgtttggaaaaatttgtcaaggtgatttataaccgataaatataatcagtttctatgctannnnn |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34322655 |
gaagaagaaagtggaagaatttccttattgtttcttgtttggaaaaatttgtcaaggtgatttataaccgataaatataatcagtttctatgctattttt |
34322754 |
T |
|
| Q |
198 |
nnnaataagctaaattgttccactgaaatttgtacaagaagaatcgaacctgagactttgttaggttgtaaagtttgcttgactcaatagaaattgatat |
297 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
34322755 |
tttaataagctaaattgttccactggaatttgtataagaagaatcgaacctgagactttgttaggttgtaaagttttctcgactcaatagaaattgatat |
34322854 |
T |
|
| Q |
298 |
atagattctaatattcttggaga |
320 |
Q |
| |
|
|| ||||||||| |||||||||| |
|
|
| T |
34322855 |
at-gattctaatgttcttggaga |
34322876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University